Jatropha Genome Database

JcCB0176391.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0176391.10 - phase: 0 /partial
         (348 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008185001 assembled CDS                                       583   e-167

>GSVIVT01008185001 assembled CDS
          Length = 374

 Score =  583 bits (1502), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 278/345 (80%), Positives = 306/345 (88%), Gaps = 2/345 (0%)

Query: 1   ERPDNWRDNAVHAQHVFAKVATAISKFEPVTVCASASQWEKARSLLPEHIRVVEMSMNDS 60
           ERPDNWRD+A  AQ VFA+VA+AISKFEPVTVCASA+QW  ARSLLP+HIRVVEMSM+DS
Sbjct: 30  ERPDNWRDHAGPAQRVFAEVASAISKFEPVTVCASAAQWANARSLLPQHIRVVEMSMDDS 89

Query: 61  WFRDTGPTFVV--NASNSSSPGQKVAGIDWKFNSWGGVDDGCYQDWSLDLLVARKILQIE 118
           WFRDTGPTFVV     +S++P QK+AGIDW FNSWGG DDGCY DWSLDLLVA+KIL+IE
Sbjct: 90  WFRDTGPTFVVIKPTPSSAAPVQKIAGIDWNFNSWGGYDDGCYNDWSLDLLVAKKILEIE 149

Query: 119 KLPRFPHFMILEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKEQIENQLKEYLGVQKVIW 178
           ++PRFP  MILEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKEQIE +LK YLGV+KVIW
Sbjct: 150 RVPRFPQSMILEGGSIHVDGEGTCLTTEECLLNKNRNPHLTKEQIEAELKSYLGVKKVIW 209

Query: 179 LPRGLYGDDDTNGHIDNMCCFVRPGVVLLSWVDDKKDPQFARSTEALFVLSNTTDAKGRK 238
           LPRGL+GDDDTNGHIDNMCCF +PGVVLLSW DD+ DPQ+ RS EA  VLSN TDA+GRK
Sbjct: 210 LPRGLFGDDDTNGHIDNMCCFAKPGVVLLSWTDDELDPQYERSVEAFSVLSNATDARGRK 269

Query: 239 LQIIKIHVPGPLYMTDEEAAGVIQDGEAKPRLPGTRLAASYVNFYIANGGIITPQFGDQE 298
           LQIIK+HVPGPLYMTDEEA+G++QD  AK R+ GTRLAASYVNFYIANG II P FGDQ+
Sbjct: 270 LQIIKLHVPGPLYMTDEEASGILQDDNAKLRVAGTRLAASYVNFYIANGRIIAPVFGDQK 329

Query: 299 RDDEAVRVLSQAFPNHEVVRIEGAREIVLGGGNIHCITQQQPAAA 343
            DDEAVRVLS AFPNHEVV I+GAREI L GGNIHCITQQQPA A
Sbjct: 330 WDDEAVRVLSLAFPNHEVVGIKGAREIALAGGNIHCITQQQPAIA 374