Jatropha Genome Database

JcCB0176301.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0176301.20 + phase: 0 
         (136 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016347001 assembled CDS                                       190   2e-49
GSVIVT01025110001 assembled CDS                                       189   4e-49
GSVIVT01025539001 assembled CDS                                       187   9e-49
GSVIVT01014673001 assembled CDS                                       185   7e-48
GSVIVT01022214001 assembled CDS                                       171   9e-44
GSVIVT01017741001 assembled CDS                                       151   1e-37
GSVIVT01002895001 assembled CDS                                       146   4e-36
GSVIVT01014689001 assembled CDS                                       135   6e-33
GSVIVT01031089001 assembled CDS                                       130   1e-31
GSVIVT01010260001 assembled CDS                                       129   5e-31
GSVIVT01010959001 assembled CDS                                       129   6e-31
GSVIVT01014690001 assembled CDS                                       128   8e-31
GSVIVT01010264001 assembled CDS                                       116   4e-27
GSVIVT01008215001 assembled CDS                                        74   2e-14
GSVIVT01030085001 assembled CDS                                        71   1e-13
GSVIVT01004375001 assembled CDS                                        69   7e-13
GSVIVT01036120001 assembled CDS                                        51   1e-07

>GSVIVT01016347001 assembled CDS
          Length = 176

 Score =  190 bits (483), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 87/93 (93%), Positives = 91/93 (97%)

Query: 27  NFREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKR 86
           N REQDRYLPIANISRIMKKALPANGKIAKDAK+TVQECVSEFISFITSEASDKCQ+EKR
Sbjct: 24  NVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKR 83

Query: 87  KTINGDDLLWAMATLGFEDYIDPLKIYLSRYRE 119
           KTINGDDLLWAMATLGFEDYI+PLK+YL RYRE
Sbjct: 84  KTINGDDLLWAMATLGFEDYIEPLKVYLQRYRE 116


>GSVIVT01025110001 assembled CDS
          Length = 133

 Score =  189 bits (480), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 88/94 (93%), Positives = 92/94 (97%)

Query: 26  SNFREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREK 85
           SN REQDRYLPIANISRIMKKALPANGKIAKDAKET+QECVSEFISFITSEASDKCQ+EK
Sbjct: 23  SNVREQDRYLPIANISRIMKKALPANGKIAKDAKETLQECVSEFISFITSEASDKCQKEK 82

Query: 86  RKTINGDDLLWAMATLGFEDYIDPLKIYLSRYRE 119
           RKTINGDDLLWAMATLGFEDYIDPLK+YL R+RE
Sbjct: 83  RKTINGDDLLWAMATLGFEDYIDPLKVYLHRFRE 116


>GSVIVT01025539001 assembled CDS
          Length = 161

 Score =  187 bits (476), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 87/95 (91%), Positives = 92/95 (96%)

Query: 25  NSNFREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQRE 84
           +SN REQDR+LPIANISRIMKKALPANGKIAKDAKE +QECVSEFISFITSEASDKCQRE
Sbjct: 21  HSNVREQDRFLPIANISRIMKKALPANGKIAKDAKEIMQECVSEFISFITSEASDKCQRE 80

Query: 85  KRKTINGDDLLWAMATLGFEDYIDPLKIYLSRYRE 119
           KRKTINGDDLLWAMATLGFEDYIDPLK+YL+ YRE
Sbjct: 81  KRKTINGDDLLWAMATLGFEDYIDPLKLYLAAYRE 115


>GSVIVT01014673001 assembled CDS
          Length = 210

 Score =  185 bits (469), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 82/92 (89%), Positives = 88/92 (95%)

Query: 29  REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 88
           REQDR+LPIAN+SRIMKKALPAN KI+KDAKETVQECVSEFISFIT EASDKCQREKRKT
Sbjct: 22  REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKT 81

Query: 89  INGDDLLWAMATLGFEDYIDPLKIYLSRYREV 120
           INGDDLLWAM TLGFEDY+DPLKIYL R+RE+
Sbjct: 82  INGDDLLWAMTTLGFEDYVDPLKIYLHRFREM 113


>GSVIVT01022214001 assembled CDS
          Length = 291

 Score =  171 bits (433), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 76/92 (82%), Positives = 86/92 (93%)

Query: 29  REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 88
           +EQDR+LPIAN+SRIMKK+LPAN KI+K+AKETVQECVSEFISFIT EASDKCQREKRKT
Sbjct: 105 KEQDRFLPIANVSRIMKKSLPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKT 164

Query: 89  INGDDLLWAMATLGFEDYIDPLKIYLSRYREV 120
           INGDDLLWAM  LGFE+Y+ PLK+YLS+YRE 
Sbjct: 165 INGDDLLWAMTMLGFENYVGPLKVYLSKYRET 196


>GSVIVT01017741001 assembled CDS
          Length = 138

 Score =  151 bits (381), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 65/96 (67%), Positives = 83/96 (86%)

Query: 25  NSNFREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQRE 84
           + + +EQDR LPIAN+SRIMK+ LP N KI+K+AKET+QECVSEFISF+T EAS+KC++E
Sbjct: 13  DGSIKEQDRLLPIANVSRIMKQTLPTNAKISKEAKETMQECVSEFISFVTGEASEKCKKE 72

Query: 85  KRKTINGDDLLWAMATLGFEDYIDPLKIYLSRYREV 120
           +RKT+NGDD+ WA+A LGF+DY  PLK YL RYRE+
Sbjct: 73  RRKTVNGDDICWALAALGFDDYAGPLKRYLQRYREL 108


>GSVIVT01002895001 assembled CDS
          Length = 211

 Score =  146 bits (368), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 81/92 (88%)

Query: 29  REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 88
           REQDR++PIAN+ RIM+K LP + KI+ DAKET+QECVSE+ISFIT EA+++CQRE+RKT
Sbjct: 48  REQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKT 107

Query: 89  INGDDLLWAMATLGFEDYIDPLKIYLSRYREV 120
           I  +D+LWAM+ LGF+DY++PL +YL RYRE+
Sbjct: 108 ITAEDVLWAMSKLGFDDYMEPLTMYLHRYREL 139


>GSVIVT01014689001 assembled CDS
          Length = 209

 Score =  135 bits (340), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 58/88 (65%), Positives = 76/88 (86%)

Query: 32  DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTING 91
           ++Y+PIAN++R+M++ LPA+ KI+ DAKETVQECVSEFISFITSEA+D+C  E RKTI  
Sbjct: 48  EQYMPIANLTRVMRRVLPAHAKISDDAKETVQECVSEFISFITSEANDRCHHELRKTITA 107

Query: 92  DDLLWAMATLGFEDYIDPLKIYLSRYRE 119
           +D++ AM+ LGF+DYIDPL +YL RYRE
Sbjct: 108 EDVIAAMSKLGFDDYIDPLTLYLHRYRE 135


>GSVIVT01031089001 assembled CDS
          Length = 147

 Score =  130 bits (328), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 71/90 (78%)

Query: 30  EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTI 89
           EQD  LPIAN+ RIMK+ LP   KI+K+ KET+QEC SEFISF+T EASDKC +E RKT+
Sbjct: 4   EQDHLLPIANVGRIMKQILPPRAKISKEGKETMQECASEFISFVTGEASDKCHKENRKTV 63

Query: 90  NGDDLLWAMATLGFEDYIDPLKIYLSRYRE 119
           NGDD+ WA++ LGF+DY + +  YL +YRE
Sbjct: 64  NGDDICWALSALGFDDYAEAILRYLHKYRE 93


>GSVIVT01010260001 assembled CDS
          Length = 152

 Score =  129 bits (323), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 56/90 (62%), Positives = 73/90 (81%)

Query: 30  EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTI 89
           EQD  LPIAN+ RIMK+  P + KI+K+AKET+QECVSEFI F+T EAS+KCQRE RKT+
Sbjct: 4   EQDLLLPIANVGRIMKQIPPPSAKISKEAKETMQECVSEFIKFVTGEASEKCQRENRKTV 63

Query: 90  NGDDLLWAMATLGFEDYIDPLKIYLSRYRE 119
           NGDD+ WA++ LGF+D+ + +  YL +YRE
Sbjct: 64  NGDDICWALSALGFDDHAEAIVRYLHKYRE 93


>GSVIVT01010959001 assembled CDS
          Length = 128

 Score =  129 bits (323), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 55/77 (71%), Positives = 67/77 (87%)

Query: 44  MKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGF 103
           MK+ LP N KI+K+AKET+QECVSEFISF+T EASDKC +EKRKT+NGDD+ WA+ TLGF
Sbjct: 1   MKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICWALGTLGF 60

Query: 104 EDYIDPLKIYLSRYREV 120
           +DY +PLK YL RYRE+
Sbjct: 61  DDYAEPLKRYLHRYREL 77


>GSVIVT01014690001 assembled CDS
          Length = 215

 Score =  128 bits (322), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 52/92 (56%), Positives = 75/92 (81%)

Query: 29  REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 88
           REQ+ Y+P+A+++R+M++ LPA+ +I+  AKE++QECV EFISFITSEA+D+   E RKT
Sbjct: 47  REQEHYMPMAHLTRVMRRVLPAHAQISDQAKESIQECVCEFISFITSEANDRSHHELRKT 106

Query: 89  INGDDLLWAMATLGFEDYIDPLKIYLSRYREV 120
           I G+D++ AM  LGF+DYI+PL +YL RYR+ 
Sbjct: 107 ITGEDIIAAMGKLGFDDYIEPLTLYLHRYRQA 138


>GSVIVT01010264001 assembled CDS
          Length = 152

 Score =  116 bits (290), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 67/90 (74%)

Query: 30  EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTI 89
           +QD  LPIAN+ RIMK+ LP   K++K+AKETVQECVSEF+ F+T EAS KC++E R+T+
Sbjct: 4   KQDLLLPIANVGRIMKQILPPGAKVSKEAKETVQECVSEFVKFVTGEASAKCRKEDRQTV 63

Query: 90  NGDDLLWAMATLGFEDYIDPLKIYLSRYRE 119
             DD+ WA++ LG +DY      YL +YRE
Sbjct: 64  TVDDICWALSALGLDDYAGATVRYLHKYRE 93


>GSVIVT01008215001 assembled CDS
          Length = 155

 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 57/78 (73%)

Query: 31  QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN 90
           +D  LP A +++I+K+ LP + ++A+DA++ + EC  EFI+ I+SE++D C RE+++TI 
Sbjct: 12  EDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLISSESNDVCSREEKRTIA 71

Query: 91  GDDLLWAMATLGFEDYID 108
            + +L A+  LGF +YI+
Sbjct: 72  PEHVLKALEVLGFGEYIE 89


>GSVIVT01030085001 assembled CDS
          Length = 482

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/45 (75%), Positives = 39/45 (86%), Gaps = 4/45 (8%)

Query: 24 SNSN----FREQDRYLPIANISRIMKKALPANGKIAKDAKETVQE 64
          SN+N     REQDR+LPIAN+SRIMKKALPAN KI+KDAKETVQ+
Sbjct: 14 SNANSELSAREQDRFLPIANVSRIMKKALPANAKISKDAKETVQD 58


>GSVIVT01004375001 assembled CDS
          Length = 114

 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/40 (77%), Positives = 36/40 (90%)

Query: 29 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSE 68
          REQDR LPIAN+SRIMKKALPAN KI+KDAKETVQ+ + +
Sbjct: 27 REQDRLLPIANVSRIMKKALPANAKISKDAKETVQDIIKD 66


>GSVIVT01036120001 assembled CDS
          Length = 193

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 5/92 (5%)

Query: 35  LPIANISRIMKKALPA---NGKI--AKDAKETVQECVSEFISFITSEASDKCQREKRKTI 89
           LP   + R++K  L     +G I   KD      E    FI ++++ A+D C+  +R+TI
Sbjct: 12  LPKTIVRRVVKDKLSQFSDDGDIIIHKDGLRAFCESARIFIHYLSATANDLCKESRRQTI 71

Query: 90  NGDDLLWAMATLGFEDYIDPLKIYLSRYREVN 121
           N DD+L A+  + F +++ PLK  L  +R+ N
Sbjct: 72  NADDVLKAIEEIEFPEFVQPLKASLDEFRKKN 103