Jatropha Genome Database
- JcCB0176301.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0176301.10 + phase: 0 /pseudo/partial
(123 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01025552001 assembled CDS 171 1e-43
GSVIVT01003848001 assembled CDS 65 9e-12
GSVIVT01010298001 assembled CDS 64 2e-11
GSVIVT01016939001 assembled CDS 59 5e-10
GSVIVT01016943001 assembled CDS 57 2e-09
GSVIVT01016937001 assembled CDS 55 9e-09
GSVIVT01016936001 assembled CDS 54 2e-08
GSVIVT01016909001 assembled CDS 54 2e-08
GSVIVT01016948001 assembled CDS 53 3e-08
GSVIVT01016934001 assembled CDS 52 6e-08
GSVIVT01035915001 assembled CDS 50 3e-07
GSVIVT01016922001 assembled CDS 49 5e-07
GSVIVT01029106001 assembled CDS 49 5e-07
GSVIVT01016915001 assembled CDS 47 2e-06
GSVIVT01016910001 assembled CDS 47 2e-06
GSVIVT01010759001 assembled CDS 47 3e-06
GSVIVT01016933001 assembled CDS 46 3e-06
GSVIVT01016926001 assembled CDS 46 5e-06
>GSVIVT01025552001 assembled CDS
Length = 924
Score = 171 bits (432), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/111 (75%), Positives = 95/111 (85%), Gaps = 2/111 (1%)
Query: 13 AKLHIESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAIL 72
AKLHIESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHG MRP ISEV+KEIQ+AI
Sbjct: 816 AKLHIESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGSMRPPISEVIKEIQEAIS 875
Query: 73 IEKESMTVREGNSDDLSRTSAHSSLNLGSLEFGGTENYLSLDDSVAQPTAR 123
IE+ + REGNS D SR S HSS+N+G ++ G TENYLS D+S+A+PT R
Sbjct: 876 IERGAEAAREGNS-DASRNSIHSSINMG-IDVGPTENYLSFDESIARPTPR 924
>GSVIVT01003848001 assembled CDS
Length = 992
Score = 64.7 bits (156), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 45/65 (69%)
Query: 13 AKLHIESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAIL 72
AK +I I+ I+DPS++ Y ++MW++ E AL C++P+ RP + ++++E++DA++
Sbjct: 878 AKPYIRDSKIEEIVDPSIKGGYHAEAMWRVVEVALACIEPYSAYRPCMVDIVRELEDALI 937
Query: 73 IEKES 77
IE +
Sbjct: 938 IENNA 942
>GSVIVT01010298001 assembled CDS
Length = 926
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 43/63 (68%)
Query: 13 AKLHIESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAIL 72
A+ I +GD+ I+DP L I+S+W+IAE A++CV+ HG RP + E++ IQDAI
Sbjct: 820 ARSLICNGDVISIVDPFLLGNVKIESIWRIAEIAILCVEQHGTSRPKMQEIILAIQDAIK 879
Query: 73 IEK 75
IE+
Sbjct: 880 IER 882
>GSVIVT01016939001 assembled CDS
Length = 873
Score = 58.9 bits (141), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 38/62 (61%)
Query: 17 IESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAILIEKE 76
IE GDIQ ++DP L+ +++ S WK E AL CV RP +S VL +++D + IE
Sbjct: 780 IERGDIQNVVDPRLQGDFNTNSAWKALETALACVPSTAIQRPDMSHVLADLKDCLEIEVG 839
Query: 77 SM 78
+M
Sbjct: 840 AM 841
>GSVIVT01016943001 assembled CDS
Length = 753
Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 37/61 (60%)
Query: 17 IESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAILIEKE 76
IE GDIQ I+DP L+ ++ S WK E AL CV G RP +S VL ++++ + IE
Sbjct: 661 IERGDIQSIVDPRLQGDFHTNSAWKALEIALACVALTGMQRPDMSHVLADLKECLEIEMA 720
Query: 77 S 77
S
Sbjct: 721 S 721
>GSVIVT01016937001 assembled CDS
Length = 858
Score = 55.1 bits (131), Expect = 9e-09, Method: Composition-based stats.
Identities = 40/108 (37%), Positives = 55/108 (50%), Gaps = 15/108 (13%)
Query: 17 IESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAILIEKE 76
IE GDI+ I+DP L+ +++ S WK E AL CV G RP +S V+ ++++ +
Sbjct: 765 IERGDIRSIVDPRLQGDFNTNSAWKAVEIALACVASTGMQRPDMSHVVVDLKECL----- 819
Query: 77 SMTVREGNSDDLSRTSAHSSLNLGSLEFGGTENY-LSLDDSVAQPTAR 123
RE S + R HS +GS F EN L L VA P AR
Sbjct: 820 ---EREVASRRIQRVGGHS---IGSGNF--LENVPLVLSTEVA-PHAR 858
>GSVIVT01016936001 assembled CDS
Length = 769
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 17 IESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAILIEKE 76
IE GDI+ I+DP L+ +++ S WK E AL CV G RP +S V+ ++++ + E
Sbjct: 676 IERGDIRSIVDPRLQGDFNTNSAWKAVEIALACVASTGMQRPDMSHVVVDLKECLETEMA 735
Query: 77 SMTVRE 82
S ++
Sbjct: 736 SRRIQR 741
>GSVIVT01016909001 assembled CDS
Length = 205
Score = 53.5 bits (127), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (54%)
Query: 17 IESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAILIEKE 76
+ +GDI+ +DP L+ E+DI S WK E A+ CV P RP++ V+ E++ + +E
Sbjct: 117 LANGDIKNTVDPRLQGEFDINSAWKAVEVAMCCVSPTSTERPAMHYVVMELKQCLEMEAS 176
Query: 77 SMTVREGNSDD 87
E S D
Sbjct: 177 QKEGHEPESKD 187
>GSVIVT01016948001 assembled CDS
Length = 1454
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 17 IESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAI 71
++ GDIQ I+DP L+ +++ S WK E AL CV RP +S VL +++D +
Sbjct: 1362 LKRGDIQNIVDPRLQGDFNTNSAWKALETALACVPSTAIQRPDMSHVLADLKDCL 1416
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 17 IESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAI 71
IE GDI+ I+D L+ E++ S WK E AL CV G RP +S V+ ++++ +
Sbjct: 696 IERGDIESIVDRRLQGEFNTNSAWKAVEIALACVASTGMQRPDMSHVVVDLKECL 750
>GSVIVT01016934001 assembled CDS
Length = 773
Score = 52.0 bits (123), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 46/81 (56%), Gaps = 9/81 (11%)
Query: 17 IESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAILIEKE 76
I+ GD++ I+DP L+ ++ S WK E AL CV G RP +S VL+++++ + +E
Sbjct: 680 IKRGDMRSIVDPRLQGAFNANSAWKALELALACVALTGMQRPDMSHVLEDLKECLEMEVT 739
Query: 77 SMTVR--------EGNS-DDL 88
S ++ GNS DDL
Sbjct: 740 SRRIQSVGSHSIGSGNSLDDL 760
>GSVIVT01035915001 assembled CDS
Length = 455
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%)
Query: 22 IQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAILIEKESM 78
+ GI+DP +RD D++ ++++A A++CVQP RP I++VL + + +E M
Sbjct: 380 LPGIVDPVVRDTMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPVELGGM 436
>GSVIVT01016922001 assembled CDS
Length = 1840
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 35/55 (63%)
Query: 17 IESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAI 71
I+ +I+GI+DP L ++DI S WK E A+ CV+ RP++S++ E++ +
Sbjct: 1758 IDRREIRGIVDPRLNGDFDISSAWKAVETAMACVRFSSVDRPTMSDIAYELKGCV 1812
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 14 KLHIESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAILI 73
+L GDI+ I+DP L+ E++ S W+ E A+ CV RP++S V+ E+++ + I
Sbjct: 819 RLVTAKGDIKMIVDPRLQGEFEANSAWRAVETAMSCVLLSSTDRPTMSHVVVELKECLKI 878
>GSVIVT01029106001 assembled CDS
Length = 884
Score = 48.9 bits (115), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 13 AKLHIESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDA 70
AK +ESGDI + DP L +YD++ M+++ A CV+ RPS+SEVL + D
Sbjct: 787 AKPLMESGDIYELADPKLGGKYDVEQMYRLVLTASYCVRQTSIWRPSMSEVLALLTDG 844
>GSVIVT01016915001 assembled CDS
Length = 804
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%), Gaps = 4/72 (5%)
Query: 17 IESGDIQGIIDPSLR-DEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAILIE- 74
I G+I+ I+DP L D + S WK E A+ CV RP++SEV+ E+++ + IE
Sbjct: 708 ISRGEIRSIVDPRLEGDLINTNSAWKAVETAMACVPSISIQRPTMSEVVGELKECLNIEI 767
Query: 75 --KESMTVREGN 84
+ + V+E N
Sbjct: 768 RDERAYNVKEDN 779
>GSVIVT01016910001 assembled CDS
Length = 1242
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 17 IESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEV 63
+ +GDI+ I+DP L+ ++DI S WK E A+ CV RP+++ V
Sbjct: 398 LANGDIKNIVDPRLQGDFDINSAWKAVEVAMSCVASTSTERPAMNYV 444
>GSVIVT01010759001 assembled CDS
Length = 739
Score = 46.6 bits (109), Expect = 3e-06, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 17 IESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAI 71
I+SGDI I+DP L+ D++++ +IA A CV+ G RPS+ +V ++ A+
Sbjct: 564 IKSGDISAILDPVLKPPSDLEALKRIATVAYKCVRMRGKERPSMDKVTTALERAL 618
>GSVIVT01016933001 assembled CDS
Length = 918
Score = 46.2 bits (108), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 17 IESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAILIEK 75
+E GDI I+DP L+ + S+W++ E A+ C+ P R ++S V+ ++++ + EK
Sbjct: 825 VERGDIGSIVDPRLQGNLNTNSVWRVLETAMACLPPISIQRVTMSHVVMQLKECLEEEK 883
>GSVIVT01016926001 assembled CDS
Length = 690
Score = 45.8 bits (107), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 37/58 (63%)
Query: 17 IESGDIQGIIDPSLRDEYDIQSMWKIAEKALMCVQPHGHMRPSISEVLKEIQDAILIE 74
+ G+I+ I+D +L +++ S WK+ E A+ CV RP++S+V+ ++++ + +E
Sbjct: 595 LAGGEIRSIVDSTLNGDFNPNSAWKLVETAMACVPRSSIQRPTMSQVVADLKECLQME 652