Jatropha Genome Database

JcCB0175951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0175951.10 + phase: 1 /partial
         (514 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026444001 assembled CDS                                       849   0.0  
GSVIVT01023852001 assembled CDS                                       799   0.0  
GSVIVT01013435001 assembled CDS                                       746   0.0  

>GSVIVT01026444001 assembled CDS
          Length = 551

 Score =  849 bits (2194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 415/517 (80%), Positives = 460/517 (88%), Gaps = 22/517 (4%)

Query: 1   YFLLHRWREKIRNSTPLHIVNFPEIAALVCLVASVIYLLGFFGIGFVHSFTSKVSTDAWE 60
           YFLLHRWREKIR STPLH++   EIAA+V ++ASVIYLLGFFG+ FV S           
Sbjct: 54  YFLLHRWREKIRTSTPLHVLTLSEIAAIVSMLASVIYLLGFFGVDFVQSL---------- 103

Query: 61  IEEYDVVKKDTRSPGPCAASLDCSVHP-TTKIAPIPL--SDDDEQIINSVVSGSIPSYSL 117
                   +D+R PGPCAA++DC   P    +AP+ +  S+++E++I SVV+GS+PSY L
Sbjct: 104 --------EDSR-PGPCAAAIDCCPPPKVADVAPVTVFSSEEEEEMIRSVVAGSVPSYLL 154

Query: 118 ESKLGDCRRAAAIRRESLQRMTGRSLEGLPLDGFDYESILGQCCEMPIGYVQIPVGIAGP 177
           ESKLGDC+RAAAIRRE+LQR TGRSL GLPLDGFDYE+ILGQCCEMP+GYVQIPVGIAGP
Sbjct: 155 ESKLGDCKRAAAIRREALQRTTGRSLAGLPLDGFDYEAILGQCCEMPVGYVQIPVGIAGP 214

Query: 178 LLLDGIEYTVPMATTEGCLVASTNRGCKAIYVSGGATSTLFRDGMTRAPVVRFPTAKRAS 237
           LLLDG EY VPMATTEGCLVASTNRGCKAI+  GGA+S + RD MTRAPVVRFPTA RA+
Sbjct: 215 LLLDGREYWVPMATTEGCLVASTNRGCKAIFTCGGASSMVLRDRMTRAPVVRFPTASRAA 274

Query: 238 DLKFFIEDPTSFDTIAVVFNKSSRFAKLQGVKCAIAGKNLYMRFNCNTGDAMGMNMVSKG 297
           DLK F+EDP +FDT+AVVFN+SSRFA+LQG+ CAIAGKNLYMRF C+TGDAMGMNMVSKG
Sbjct: 275 DLKLFVEDPINFDTLAVVFNRSSRFARLQGIHCAIAGKNLYMRFGCSTGDAMGMNMVSKG 334

Query: 298 VQNVLDYLRDDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVRKVLKT 357
           VQNVLD+L+ DFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAII +EVVRKVLKT
Sbjct: 335 VQNVLDFLQTDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIGDEVVRKVLKT 394

Query: 358 NVAALVELNMLKNLTGSAVAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEA 417
           +VAALVELNMLKNLTGSAVAGALGGFNAHASNIV+AVYIATGQDPAQNVESSHCITMMEA
Sbjct: 395 SVAALVELNMLKNLTGSAVAGALGGFNAHASNIVSAVYIATGQDPAQNVESSHCITMMEA 454

Query: 418 VNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKELPGSNSRLLASIVAG 477
           VNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKE PGSNSRLLA+IVAG
Sbjct: 455 VNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGSNSRLLATIVAG 514

Query: 478 SVLAGELSLMSALAAGQLVKSHMRYNRSSKDVPKIAS 514
           SVLAGELSLMSA+AAGQLVKSH++YNRSS+DV KIAS
Sbjct: 515 SVLAGELSLMSAIAAGQLVKSHLKYNRSSRDVSKIAS 551


>GSVIVT01023852001 assembled CDS
          Length = 553

 Score =  799 bits (2064), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/510 (77%), Positives = 451/510 (88%), Gaps = 17/510 (3%)

Query: 3   LLHRWREKIRNSTPLHIVNFPEIAALVCLVASVIYLLGFFGIGFVHSFTSKVSTD-AWEI 61
           LL RWREKIR STPLH+V   EIAA+V  + S I+LLGFFGI FV  F ++   D  W+ 
Sbjct: 59  LLTRWREKIRTSTPLHVVTLSEIAAIVTFMGSCIFLLGFFGIDFVQGFIARPGHDNEWDA 118

Query: 62  EEYDVVKKDTRSPGPCAASLDCSVHPTTKIAPIPLSDDDEQIINSVVSGSIPSYSLESKL 121
           E+  +VK+D R+                 ++P P S++DE+II SVV+G+IPSYSLES+L
Sbjct: 119 EDDIIVKEDARA---------------VPVSP-PSSEEDEEIIKSVVAGAIPSYSLESRL 162

Query: 122 GDCRRAAAIRRESLQRMTGRSLEGLPLDGFDYESILGQCCEMPIGYVQIPVGIAGPLLLD 181
           GDCRRAAAIRRE+LQRMTG SLEGLPL+G DYESILGQCCEMP+GY+QIPVGIAGPLLLD
Sbjct: 163 GDCRRAAAIRREALQRMTGTSLEGLPLEGLDYESILGQCCEMPVGYIQIPVGIAGPLLLD 222

Query: 182 GIEYTVPMATTEGCLVASTNRGCKAIYVSGGATSTLFRDGMTRAPVVRFPTAKRASDLKF 241
           G EY++PMATTEGCLVASTNRGCKAIY SGGATS L RD MTRAPVVRF TAKRA++L  
Sbjct: 223 GREYSIPMATTEGCLVASTNRGCKAIYASGGATSVLLRDAMTRAPVVRFGTAKRAAELML 282

Query: 242 FIEDPTSFDTIAVVFNKSSRFAKLQGVKCAIAGKNLYMRFNCNTGDAMGMNMVSKGVQNV 301
           F+E+P +F+T+A+VFN+SSRF KLQ +KCAIAGKNLY+RF+ +TGDAMGMNM+SKGVQNV
Sbjct: 283 FLENPLNFETLALVFNRSSRFGKLQSIKCAIAGKNLYIRFSSSTGDAMGMNMISKGVQNV 342

Query: 302 LDYLRDDFPDMDVIGISGNFCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVRKVLKTNVAA 361
           LD+L++DFPDMDVIGISGN+CSDKKP AVNWIEGRGKSVVCEAIIKEEVV+KVLKTNVAA
Sbjct: 343 LDFLQNDFPDMDVIGISGNYCSDKKPTAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVAA 402

Query: 362 LVELNMLKNLTGSAVAGALGGFNAHASNIVTAVYIATGQDPAQNVESSHCITMMEAVNDG 421
           LVELNMLKNLTGSA+AGALGGFNAHASNIV+AVYIATGQDPAQNVESSHCITMMEAVNDG
Sbjct: 403 LVELNMLKNLTGSAMAGALGGFNAHASNIVSAVYIATGQDPAQNVESSHCITMMEAVNDG 462

Query: 422 KDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKELPGSNSRLLASIVAGSVLA 481
           KDLH+SVTMPSIEVGTVGGGTQLASQSACLNLLGVKGA+KE PG+N+RLLA+IVAGSVLA
Sbjct: 463 KDLHVSVTMPSIEVGTVGGGTQLASQSACLNLLGVKGANKESPGTNARLLATIVAGSVLA 522

Query: 482 GELSLMSALAAGQLVKSHMRYNRSSKDVPK 511
           GELSLMSA+AAGQLV+SHM+YNRS+KDV K
Sbjct: 523 GELSLMSAIAAGQLVRSHMKYNRSNKDVSK 552


>GSVIVT01013435001 assembled CDS
          Length = 541

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/416 (84%), Positives = 397/416 (95%)

Query: 99  DDEQIINSVVSGSIPSYSLESKLGDCRRAAAIRRESLQRMTGRSLEGLPLDGFDYESILG 158
            DE I+  VVSG+IPSYSLESKLGDC+RAA+IRRE+LQR+TG+SL  LP +GFDY++ILG
Sbjct: 126 QDEDIVKLVVSGTIPSYSLESKLGDCKRAASIRREALQRLTGKSLLELPFEGFDYQAILG 185

Query: 159 QCCEMPIGYVQIPVGIAGPLLLDGIEYTVPMATTEGCLVASTNRGCKAIYVSGGATSTLF 218
           QCCEMP+GYVQIPVGIAGPLLLDG EY+VPMATTEGCLVASTNRGCKAIYVSGGATS + 
Sbjct: 186 QCCEMPVGYVQIPVGIAGPLLLDGFEYSVPMATTEGCLVASTNRGCKAIYVSGGATSMVL 245

Query: 219 RDGMTRAPVVRFPTAKRASDLKFFIEDPTSFDTIAVVFNKSSRFAKLQGVKCAIAGKNLY 278
           RDGMTRAPVVRF TAKRA++LKFF+E+P +F+T++V+FN+SSRFA+LQ ++CA+AGKNLY
Sbjct: 246 RDGMTRAPVVRFATAKRAAELKFFLENPENFETLSVIFNRSSRFARLQSIQCAMAGKNLY 305

Query: 279 MRFNCNTGDAMGMNMVSKGVQNVLDYLRDDFPDMDVIGISGNFCSDKKPAAVNWIEGRGK 338
           +RF+C+TGDAMGMNMVSKGVQNVLD+L++DFPDMDVIGISGNFCSDKKPAAVNWIEGRGK
Sbjct: 306 IRFSCSTGDAMGMNMVSKGVQNVLDFLQNDFPDMDVIGISGNFCSDKKPAAVNWIEGRGK 365

Query: 339 SVVCEAIIKEEVVRKVLKTNVAALVELNMLKNLTGSAVAGALGGFNAHASNIVTAVYIAT 398
           SVVCEA+IKE+VVRKVLKTN+AALVELNMLKNL GSAVAGALGGFNAHA NIV+A++IAT
Sbjct: 366 SVVCEAVIKEDVVRKVLKTNIAALVELNMLKNLAGSAVAGALGGFNAHAGNIVSAIFIAT 425

Query: 399 GQDPAQNVESSHCITMMEAVNDGKDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKG 458
           GQDPAQNVES HCITMMEAVNDGKDLHISVTMPS+EVGTVGGGTQL SQSACLNLLGVKG
Sbjct: 426 GQDPAQNVESCHCITMMEAVNDGKDLHISVTMPSVEVGTVGGGTQLPSQSACLNLLGVKG 485

Query: 459 ASKELPGSNSRLLASIVAGSVLAGELSLMSALAAGQLVKSHMRYNRSSKDVPKIAS 514
           ASKE PGSNS+LLA+I+AGSVLAGELSLMSA+AAGQLVKSHM+YNRSSKDV K+AS
Sbjct: 486 ASKESPGSNSKLLATIIAGSVLAGELSLMSAIAAGQLVKSHMKYNRSSKDVSKVAS 541