Jatropha Genome Database

JcCB0175111.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0175111.20 - phase: 0 /partial
         (110 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036786001 assembled CDS                                       198   4e-52

>GSVIVT01036786001 assembled CDS
          Length = 380

 Score =  198 bits (503), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 92/110 (83%), Positives = 98/110 (89%)

Query: 1   MDVFSSCRFDGAAPEPRKGIKSGHIPGSKCIPFPQMLDASQTLLPADELKKRFDQEGISL 60
           +D  S  RFDG APEPRKGI+SGH+P SKCIPF QMLD+SQ LLPADELKKRFDQEGISL
Sbjct: 267 IDARSKARFDGIAPEPRKGIRSGHVPSSKCIPFSQMLDSSQKLLPADELKKRFDQEGISL 326

Query: 61  ESSIVTSCGTGVTACILALGLHRLGKQDVAVYDGSWTEWGAHPDTPVDTS 110
           +S +VTSCGTGVTACILALGLHRLGK DV VYDGSWTEWGAHPDTPV TS
Sbjct: 327 DSPVVTSCGTGVTACILALGLHRLGKSDVTVYDGSWTEWGAHPDTPVATS 376