Jatropha Genome Database

JcCB0175111.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0175111.10 + phase: 0 /partial
         (129 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01037927001 assembled CDS                                       124   1e-29
GSVIVT01030333001 assembled CDS                                        67   2e-12
GSVIVT01026516001 assembled CDS                                        64   1e-11
GSVIVT01009479001 assembled CDS                                        64   2e-11
GSVIVT01030846001 assembled CDS                                        53   4e-08
GSVIVT01037846001 assembled CDS                                        51   2e-07
GSVIVT01009357001 assembled CDS                                        51   2e-07
GSVIVT01022120001 assembled CDS                                        50   4e-07

>GSVIVT01037927001 assembled CDS
          Length = 264

 Score =  124 bits (311), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/108 (61%), Positives = 82/108 (75%), Gaps = 3/108 (2%)

Query: 6   RSVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVLRFL 65
            S+SAQSIAAR+RRRKIT+KTQ LG+LIPGG+KMNTAEM QAA+KYVKYLQAQ+ +L+ L
Sbjct: 137 ESLSAQSIAARQRRRKITEKTQELGKLIPGGNKMNTAEMFQAAFKYVKYLQAQVAILQ-L 195

Query: 66  FGSSQL--KAKDIKELQILGSASFQEKLYMQEKCLVPNEIALILTNNQ 111
            GS Q+  +A  ++ELQ   S   QEKLY  EKCLV  +    L N++
Sbjct: 196 MGSLQVNSEAFYVEELQATASPMIQEKLYSVEKCLVSKQFVEALANDE 243


>GSVIVT01030333001 assembled CDS
          Length = 161

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 41/55 (74%)

Query: 7  SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGV 61
          S   QS+AARERR +I+D+ ++L  L+PGG+KM+T  ML+ A  YVKYL+ Q+ +
Sbjct: 37 STDPQSVAARERRHRISDRFKILQSLVPGGTKMDTVSMLEEAIHYVKYLKTQIWL 91


>GSVIVT01026516001 assembled CDS
          Length = 136

 Score = 64.3 bits (155), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 27/50 (54%), Positives = 40/50 (80%)

Query: 10 AQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQL 59
           QS+AAR RR +I++K ++L RL+PGG+KM+TA ML  A +YVK+L+ Q+
Sbjct: 35 PQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQI 84


>GSVIVT01009479001 assembled CDS
          Length = 248

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/53 (52%), Positives = 40/53 (75%)

Query: 7   SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQL 59
           S   QS+AAR RR +I++K ++L RL+PGG+KM+TA ML  A  YVK+L+ Q+
Sbjct: 152 SKDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIHYVKFLKTQV 204


>GSVIVT01030846001 assembled CDS
          Length = 347

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 46/73 (63%), Gaps = 2/73 (2%)

Query: 10  AQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVLRF--LFG 67
            QS+AA+ RR +I+++ ++L  L+P GSK++   ML+ A  YVK+LQ Q+ VL     + 
Sbjct: 257 PQSLAAKNRRERISERLKILQDLVPNGSKVDLVTMLEKAISYVKFLQLQVKVLATDEFWP 316

Query: 68  SSQLKAKDIKELQ 80
               KA DI +++
Sbjct: 317 VQGGKAPDISQVK 329


>GSVIVT01037846001 assembled CDS
          Length = 350

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 40/56 (71%)

Query: 7   SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
           +   QS+ AR+RR +I ++ ++L  L+P G+K++ + ML+ A +YVK+LQ Q+ +L
Sbjct: 266 ATDPQSLYARKRRERINERLKILQNLVPNGTKVDISTMLEEAVEYVKFLQLQIKLL 321


>GSVIVT01009357001 assembled CDS
          Length = 186

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 39/56 (69%)

Query: 7   SVSAQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQLGVL 62
           +   QS+ AR+RR +I ++ ++L  L+P G+K++ + ML+ A  YVK+LQ Q+ +L
Sbjct: 100 ATDPQSLYARKRRERINERLRILQNLVPNGTKVDISTMLEEAVHYVKFLQLQIKLL 155


>GSVIVT01022120001 assembled CDS
          Length = 252

 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/50 (52%), Positives = 39/50 (78%)

Query: 10  AQSIAARERRRKITDKTQLLGRLIPGGSKMNTAEMLQAAYKYVKYLQAQL 59
            QS+AAR RR +I+++ ++L RL+PGG+KM+TA ML  A  YVK+L+ Q+
Sbjct: 154 PQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKNQV 203