Jatropha Genome Database

JcCB0175021.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0175021.10 + phase: 0 /pseudo
         (131 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01020167001 assembled CDS                                       180   2e-46
GSVIVT01037810001 assembled CDS                                        88   1e-18
GSVIVT01009139001 assembled CDS                                        79   4e-16
GSVIVT01003610001 assembled CDS                                        74   1e-14
GSVIVT01009432001 assembled CDS                                        62   6e-11
GSVIVT01006022001 assembled CDS                                        56   4e-09
GSVIVT01000451001 assembled CDS                                        54   2e-08
GSVIVT01003175001 assembled CDS                                        51   2e-07
GSVIVT01000226001 assembled CDS                                        50   3e-07
GSVIVT01000515001 assembled CDS                                        49   7e-07
GSVIVT01009353001 assembled CDS                                        46   5e-06

>GSVIVT01020167001 assembled CDS
          Length = 324

 Score =  180 bits (456), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 93/119 (78%), Positives = 99/119 (83%), Gaps = 1/119 (0%)

Query: 1   MSLPCSDCFTDLLCSEDSSEIFSAESPECSSDLESPAFIEESIASFIEDERNFVPGFDYL 60
           MSL  SD F+DLLC EDSS I S + PECSSDLESP  IEESIA FIEDERNFVPGFDYL
Sbjct: 1   MSLSYSDRFSDLLCGEDSS-ILSGDLPECSSDLESPTDIEESIAGFIEDERNFVPGFDYL 59

Query: 61  SRFQSRSLDASAREESVAWILKVQAYYSFQPLTAYLSVNYLDRFLYSRPLPVSCSLKLN 119
           +RF+S SLDASAREESVAWILKVQAY+ FQPLTAYLSVNYLDRFLYSR LP +    L 
Sbjct: 60  ARFRSHSLDASAREESVAWILKVQAYHGFQPLTAYLSVNYLDRFLYSRRLPQTNGWPLQ 118


>GSVIVT01037810001 assembled CDS
          Length = 354

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/108 (45%), Positives = 64/108 (59%), Gaps = 8/108 (7%)

Query: 12  LLCSEDSSEIFSAESPECSSD--------LESPAFIEESIASFIEDERNFVPGFDYLSRF 63
           L C+ED  ++ S +S    SD          SP F E +I  F   E +  P  DYL R 
Sbjct: 17  LYCAEDVEDVVSWDSDTWISDPGSSPLVYAHSPPFDESTIERFFGSEPDHRPMEDYLCRC 76

Query: 64  QSRSLDASAREESVAWILKVQAYYSFQPLTAYLSVNYLDRFLYSRPLP 111
           + RS+D ++R++S+ WILKV AYY F+P+TA LSVNYLDRFL    LP
Sbjct: 77  RDRSVDVTSRQDSINWILKVHAYYHFRPVTAILSVNYLDRFLSRHALP 124


>GSVIVT01009139001 assembled CDS
          Length = 355

 Score = 79.3 bits (194), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 66/135 (48%), Gaps = 27/135 (20%)

Query: 4   PCSDCF-TDLLCSEDSSEIFS-AESPECSSDLES-------------------------P 36
           P  DC  + LLC ED+S IF  A+    + + E+                         P
Sbjct: 3   PSFDCAASSLLCGEDNSSIFDDADYGAAAEEFETAWHHQNHRSRNQEKSFNGGEFLIGLP 62

Query: 37  AFIEESIASFIEDERNFVPGFDYLSRFQSRSLDASAREESVAWILKVQAYYSFQPLTAYL 96
              +E +A  IE E   +P  DYL R +S  LD  +R++ V WI K  A++ F PL AYL
Sbjct: 63  VQSDECLALMIEKESQHLPAADYLMRLRSGDLDIGSRQDVVGWIAKAHAHFGFGPLCAYL 122

Query: 97  SVNYLDRFLYSRPLP 111
           ++NYLDRFL +  LP
Sbjct: 123 AINYLDRFLSTYELP 137


>GSVIVT01003610001 assembled CDS
          Length = 353

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/80 (43%), Positives = 46/80 (57%)

Query: 33  LESPAFIEESIASFIEDERNFVPGFDYLSRFQSRSLDASAREESVAWILKVQAYYSFQPL 92
           +E P   EE +   +E E  ++P  DYL R +S  LD   R E+V WILK  A + F PL
Sbjct: 56  IECPMLSEERLREMVEREGEYMPRDDYLGRLRSGDLDLGVRREAVDWILKAHACHGFGPL 115

Query: 93  TAYLSVNYLDRFLYSRPLPV 112
           + YLS+N+LDR L    LP 
Sbjct: 116 SLYLSINFLDRVLSVYQLPT 135


>GSVIVT01009432001 assembled CDS
          Length = 372

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 45/68 (66%), Gaps = 5/68 (7%)

Query: 40  EESIASFIEDERNFVPGFDYLSRFQSRSLDASAREESVAWILKVQAYYSFQPLTAYLSVN 99
           EE ++ F ++E+N     D  S  +S  L A AR E+V W+L+V A+YSF  LTA L+VN
Sbjct: 70  EELVSLFSKEEKN-----DLHSNPESNPLAAGARSEAVEWMLRVNAHYSFSALTAVLAVN 124

Query: 100 YLDRFLYS 107
           Y DRFL+S
Sbjct: 125 YFDRFLFS 132


>GSVIVT01006022001 assembled CDS
          Length = 305

 Score = 56.2 bits (134), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/40 (60%), Positives = 33/40 (82%)

Query: 72  AREESVAWILKVQAYYSFQPLTAYLSVNYLDRFLYSRPLP 111
           AR+++V W+LKV ++Y+F+P TAYLSV YLDRFL +  LP
Sbjct: 69  ARQDAVNWMLKVHSHYNFRPETAYLSVTYLDRFLCTYDLP 108


>GSVIVT01000451001 assembled CDS
          Length = 315

 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 8/91 (8%)

Query: 22  FSAESPECSS-DLESPAFIEESIASFIEDERNFVPGFDYLSRFQSRSLDASAREESVAWI 80
           F  E+P  SS DL S A     +AS  + E + +P  DY     S   D S R ++++ I
Sbjct: 3   FDLENPLTSSQDLHSHA-----VASLFQAENHHMPSIDYCGSLDSVDCDVSFRRQAISSI 57

Query: 81  LKVQAYYSFQPLTAYLSVNYLDRFLYSRPLP 111
           L++ +  SF P  +YL++NYLDRFL    +P
Sbjct: 58  LQMSS--SFDPFLSYLAINYLDRFLSRSEMP 86


>GSVIVT01003175001 assembled CDS
          Length = 374

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 29/38 (76%)

Query: 70  ASAREESVAWILKVQAYYSFQPLTAYLSVNYLDRFLYS 107
           A AR ++V W++KV A+Y F  +TA L++NYLDRFL S
Sbjct: 93  AVARRQAVEWMMKVNAHYGFSAVTAILAINYLDRFLSS 130


>GSVIVT01000226001 assembled CDS
          Length = 309

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/36 (61%), Positives = 27/36 (75%)

Query: 72  AREESVAWILKVQAYYSFQPLTAYLSVNYLDRFLYS 107
           AR ++V W+LKV A+Y F  LTA L+VNY DRFL S
Sbjct: 32  ARTKAVEWMLKVNAHYGFSALTAVLAVNYFDRFLSS 67


>GSVIVT01000515001 assembled CDS
          Length = 107

 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 29/44 (65%)

Query: 62  RFQSRSLDASAREESVAWILKVQAYYSFQPLTAYLSVNYLDRFL 105
           R ++  L   +R++ V WI KV A++ F PL  YL++NYLD FL
Sbjct: 2   RLRNGDLGIGSRQDVVDWIAKVHAHFGFGPLCTYLAINYLDWFL 45


>GSVIVT01009353001 assembled CDS
          Length = 317

 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/39 (53%), Positives = 28/39 (71%)

Query: 72  AREESVAWILKVQAYYSFQPLTAYLSVNYLDRFLYSRPL 110
           AR ++VAWIL+ +A + F+  TAYL V YLDRFL  R +
Sbjct: 66  ARLDAVAWILRTRAVFGFRFQTAYLCVAYLDRFLSRRAI 104