Jatropha Genome Database

JcCB0174321.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0174321.10 - phase: 0 /pseudo
         (367 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033731001 assembled CDS                                       451   e-127
GSVIVT01033730001 assembled CDS                                       102   3e-22
GSVIVT01019772001 assembled CDS                                        93   2e-19
GSVIVT01026951001 assembled CDS                                        56   2e-08

>GSVIVT01033731001 assembled CDS
          Length = 606

 Score =  451 bits (1159), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 236/342 (69%), Positives = 258/342 (75%), Gaps = 8/342 (2%)

Query: 1   MEALRLTPSQSPILRPNHRFELAP--QTLSRSHRNPFKSFINAAISKHTAEVXXXXXXXX 58
           ME+L  + +   +LRP     + P    L  S   PF   I A ISK  AE+        
Sbjct: 1   MESLCFSTTHFSLLRPTLPNPIRPIKHVLIGSAAKPF---IKATISKPAAEISGTSSTTV 57

Query: 59  XXXXXXXXXXXXXXXXXLKKVSPNSLQYPSGYLGAVPDRTVQDVTNDIINAMGYLTSILS 118
                            LK+VS +SLQY  G +GAVPDRT+ D  + ++ AM YLT+ILS
Sbjct: 58  TSSQTSLHPSPVPP---LKRVSSDSLQYQPGCIGAVPDRTIHDGIDGVVGAMEYLTNILS 114

Query: 119 SKVYDVAIESPLQFAPKLSERLGVKVWLKREDLQPVFSFKLRGAYNMMAKIPKEQLERGV 178
           SKVYDVAIESPLQ APKLSERLG ++WLKREDLQPVFSFKLRGAYNMMAKIPKEQLERGV
Sbjct: 115 SKVYDVAIESPLQLAPKLSERLGAQIWLKREDLQPVFSFKLRGAYNMMAKIPKEQLERGV 174

Query: 179 ICSSAGNHAQGVALAAKRLGCNAVIAMPVTTPEIKWQSVERLGATVVLVGDSYDEAQAYA 238
           ICSSAGNHAQGVALAAKRLGCNAVIAMPVTTPEIKW+SVERLGATVVLVGDSYDEAQAYA
Sbjct: 175 ICSSAGNHAQGVALAAKRLGCNAVIAMPVTTPEIKWKSVERLGATVVLVGDSYDEAQAYA 234

Query: 239 KKRAKEEDRTFIPPFDHPDVIMGQGTVGMEIVRQMQAPLHAIFVPXXXXXXXXXXXXYVK 298
           K+R +EE RTFIPPFDHPDVIMGQGT+GMEIVRQMQ PL AIFVP            YVK
Sbjct: 235 KQRGEEECRTFIPPFDHPDVIMGQGTIGMEIVRQMQGPLDAIFVPVGGGGLIAGIAAYVK 294

Query: 299 RVNPEVKIIGVEPSDANAMALSLHHGERVMLDHVGGFADGVA 340
           RV+PEVKIIGVEP DANAMALSLHH +RVMLD VGGFADGVA
Sbjct: 295 RVSPEVKIIGVEPCDANAMALSLHHDQRVMLDQVGGFADGVA 336


>GSVIVT01033730001 assembled CDS
          Length = 180

 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 60/79 (75%)

Query: 76  LKKVSPNSLQYPSGYLGAVPDRTVQDVTNDIINAMGYLTSILSSKVYDVAIESPLQFAPK 135
           L+KVSP+SLQY  GYLGAVP   V +    ++ AM YLT+ILSSKVYD++ ESPLQ A  
Sbjct: 52  LRKVSPDSLQYEEGYLGAVPAGRVDESREGVVKAMRYLTNILSSKVYDISTESPLQLAQN 111

Query: 136 LSERLGVKVWLKREDLQPV 154
           LS RLGV++WLKRED  PV
Sbjct: 112 LSRRLGVQLWLKREDFPPV 130


>GSVIVT01019772001 assembled CDS
          Length = 333

 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 65/214 (30%), Positives = 103/214 (48%), Gaps = 3/214 (1%)

Query: 127 ESPLQFAPKLSERLGVKVWLKREDLQPVFSFKLRGAYNMMAKIPKEQLERGVICSSAGNH 186
           ++P+  +  L+   G  ++ K E  Q   +FK RGA N +  +  EQ  +GV+  S+GNH
Sbjct: 32  KTPVLTSETLNSLAGRGLFFKCECFQKGGAFKFRGACNAIFSLDDEQAAKGVVTHSSGNH 91

Query: 187 AQGVALAAKRLGCNAVIAMPVTTPEIKWQSVERLGATVVLVGDSYDEAQAYAKKRAKEED 246
           A  ++LAAK  G  A I +P   P  K ++V R G  V+    +    +  A +  +E  
Sbjct: 92  AAALSLAAKLRGIPAYIVIPENAPRCKVENVIRYGGQVIWSRATMQSREDIATRVLQETG 151

Query: 247 RTFIPPFDHPDVIMGQGTVGMEIVRQMQAP-LHAIFVPXXXXXXXXXXXXYVKRVNPEVK 305
              + P++   +I GQGTV +E++   QAP +  I VP              K +NP ++
Sbjct: 152 AVLLHPYNDGRIISGQGTVSLELLE--QAPQIDTIMVPISGGGLISGVALAAKSINPSIR 209

Query: 306 IIGVEPSDANAMALSLHHGERVMLDHVGGFADGV 339
           +   EP  AN  A S + G  + L      ADG+
Sbjct: 210 VFAAEPKGANDAAQSKNAGRIITLPETNTIADGL 243


>GSVIVT01026951001 assembled CDS
          Length = 371

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 52/201 (25%), Positives = 88/201 (43%), Gaps = 12/201 (5%)

Query: 127 ESPLQFAPKLSERLGVKVWLKREDLQPVFSFKLRGAYNMMAKIPKEQL----ERGVICSS 182
           ++PL F  K++E  G  V +K+E +QP  S K R A  M+     +QL    +  +I  +
Sbjct: 62  KTPLVFLNKVTEGCGAYVAVKQEMMQPTASIKDRPALAMITDAEDKQLITPGKTVLIEPT 121

Query: 183 AGNHAQGVALAAKRLGCNAVIAMPVTTPEIKWQSVERLGATVVLVGDSYDEAQAYAKKRA 242
           +GN    +A  A   G   V+ MP  T   +  ++   GA ++L   +  +      K+A
Sbjct: 122 SGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGADLILTDPT--KGMGGTVKKA 179

Query: 243 KE-----EDRTFIPPFDHP-DVIMGQGTVGMEIVRQMQAPLHAIFVPXXXXXXXXXXXXY 296
            E      D   +  F +P +  +   T G EI    +  +    +             Y
Sbjct: 180 YELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTRGQVDIFIMGIGSGGTVSGVGRY 239

Query: 297 VKRVNPEVKIIGVEPSDANAM 317
           +K  NP VKI G+EP+++N +
Sbjct: 240 LKSQNPNVKIYGLEPTESNVL 260