Jatropha Genome Database

JcCB0174221.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0174221.20 - phase: 0 /partial
         (77 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016717001 assembled CDS                                        62   5e-11

>GSVIVT01016717001 assembled CDS
          Length = 895

 Score = 62.0 bits (149), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 39/58 (67%), Gaps = 1/58 (1%)

Query: 16  QVSVSLMESGNPPEKHDELIELVACPDTGXXXXXXXXXXXXXXXXEREYSICKMELEE 73
           QVSVSL++SG+PPE H ELIELVACP+TG                EREYSI KMEL+E
Sbjct: 833 QVSVSLVQSGDPPENH-ELIELVACPETGFVHLFSQHQLQEFLLLEREYSIYKMELQE 889