Jatropha Genome Database

JcCB0174101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0174101.20 + phase: 0 /partial
         (226 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033565001 assembled CDS                                       211   3e-55
GSVIVT01019004001 assembled CDS                                       204   2e-53
GSVIVT01009670001 assembled CDS                                       204   3e-53
GSVIVT01008770001 assembled CDS                                       198   1e-51
GSVIVT01029794001 assembled CDS                                       119   1e-27
GSVIVT01033263001 assembled CDS                                       109   9e-25
GSVIVT01007904001 assembled CDS                                       107   6e-24
GSVIVT01024641001 assembled CDS                                       106   8e-24

>GSVIVT01033565001 assembled CDS
          Length = 1379

 Score =  211 bits (536), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/190 (55%), Positives = 134/190 (70%), Gaps = 2/190 (1%)

Query: 31   KDDQTLKMNAGAFYLPKDDKERPQGEDAHFICK-EKLTIGVADGVGGWARKGVDAGIYAR 89
            K  ++LKMN  ++Y+PK +   P+GEDAHFI K +  TIGVADGVGGW ++GVD G YAR
Sbjct: 1032 KRKRSLKMNLESYYIPKQNISNPKGEDAHFIHKADYQTIGVADGVGGWTQRGVDEGKYAR 1091

Query: 90   RLMENSIIALQGEKKGSVNPRKVLQEAYSNTNVKGSSTACIITIDSNNCLHYVNLGDSGF 149
             LM+N ++AL  E KG VNP  VL EAY  T   GSSTACIIT+  +N LH VN+GDSGF
Sbjct: 1092 ELMKNCVLALDSENKGVVNPMMVLNEAYFKTKAPGSSTACIITLTRDNYLHVVNVGDSGF 1151

Query: 150  LLFRENKYIYKSKVQQHEFNHPYQLGTCS-DDLPCLAYEEKILVEAGDIVVAGTDGLLDN 208
            +LFR+ + +YKS +QQ  FN PYQLG     D P  A E K+ V+  DI+V GTDGL DN
Sbjct: 1152 MLFRDGEMVYKSPIQQRGFNCPYQLGRSKGSDRPSSAEELKVAVKERDILVVGTDGLFDN 1211

Query: 209  IYPSEITKIL 218
            ++ SE+ +I+
Sbjct: 1212 MFVSEMKEII 1221


>GSVIVT01019004001 assembled CDS
          Length = 332

 Score =  204 bits (519), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 102/189 (53%), Positives = 135/189 (71%), Gaps = 2/189 (1%)

Query: 34  QTLKMNAGAFYLPKDDKERPQGEDAHFICKEKLTIGVADGVGGWARKGVDAGIYARRLME 93
           +TLK+ +G+ YLP  DKE   GEDAHFIC ++  IGVADGVGGWA  GVDAG YAR LM 
Sbjct: 82  RTLKLISGSCYLPHPDKEETGGEDAHFICIDEQAIGVADGVGGWADVGVDAGEYARELMS 141

Query: 94  NSIIALQGEKKGSVNPRKVLQEAYSNTNVKGSSTACIITIDSNNCLHYVNLGDSGFLLFR 153
           NS+ A+Q E KGS++P +VL++A+S+T  KGSSTACI+ + ++  L  +NLGDSGF++ R
Sbjct: 142 NSVTAIQEEPKGSIDPSRVLEKAHSSTKAKGSSTACIVAL-TDQGLQAINLGDSGFIVVR 200

Query: 154 ENKYIYKSKVQQHEFNHPYQLGTC-SDDLPCLAYEEKILVEAGDIVVAGTDGLLDNIYPS 212
           +   I++S VQQH FN  YQL +  + DLP       I V  GD++VAGTDGL DN+Y S
Sbjct: 201 DGCTIFQSPVQQHGFNFTYQLESGRAGDLPSSGQVFTIPVAPGDVIVAGTDGLFDNLYNS 260

Query: 213 EITKILEKA 221
           E+T ++  A
Sbjct: 261 EVTAVVVHA 269


>GSVIVT01009670001 assembled CDS
          Length = 286

 Score =  204 bits (518), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/210 (50%), Positives = 142/210 (67%), Gaps = 7/210 (3%)

Query: 13  ELSIVTKCDENNIDYFHKKDDQTLKMNAGAFYLPKDDKERPQGEDAHFICKEKLTIGVAD 72
           +L+  +   E NI     + D+TLK  +G+ YLP  DKE   GEDAHFIC ++  IGVAD
Sbjct: 11  QLANSSVSSEQNI-----QSDRTLKFLSGSCYLPHPDKEETGGEDAHFICIDEHAIGVAD 65

Query: 73  GVGGWARKGVDAGIYARRLMENSIIALQGEKKGSVNPRKVLQEAYSNTNVKGSSTACIIT 132
           GVGGWA  GVD+G YAR LM NS+ A+Q E KGSV+P +VL++A+ +T  KGSSTACII 
Sbjct: 66  GVGGWAELGVDSGQYARELMSNSVTAIQEEPKGSVDPARVLEKAHFSTKAKGSSTACIIA 125

Query: 133 IDSNNCLHYVNLGDSGFLLFRENKYIYKSKVQQHEFNHPYQLGTCS-DDLPCLAYEEKIL 191
           + +   LH +NLGDSGF++ R+   +++S VQQH+FN  YQL + +  DLP       I 
Sbjct: 126 L-TEQGLHAINLGDSGFIVIRDGCTVFRSPVQQHDFNFTYQLESGNGGDLPSSGQVFTIP 184

Query: 192 VEAGDIVVAGTDGLLDNIYPSEITKILEKA 221
           V  GD+V+AGTDGL DN+Y +E+  ++  A
Sbjct: 185 VAPGDVVIAGTDGLFDNLYNNEVIAVVVHA 214


>GSVIVT01008770001 assembled CDS
          Length = 288

 Score =  198 bits (504), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 100/183 (54%), Positives = 132/183 (72%), Gaps = 2/183 (1%)

Query: 33  DQTLKMNAGAFYLPKDDKERPQGEDAHFICKEKLTIGVADGVGGWARKGVDAGIYARRLM 92
           +++L M+ G+FY+P  +K   +G+DA+FI K   TIG+ADGV GWA +G+D G YAR+LM
Sbjct: 6   ERSLIMDLGSFYIPDKNKSSTKGDDAYFISKHHQTIGLADGVAGWAEQGIDGGEYARQLM 65

Query: 93  ENSIIALQGEKKGSVNPRKVLQEAYSNTNVKGSSTACIITIDSNNCLHYVNLGDSGFLLF 152
           +N +  L  E+K  V P+ VL++AYSNTNV+GSSTACIIT+     L+ VN+GDSGF+LF
Sbjct: 66  DNCVTTLYAEEKEIVYPQIVLEKAYSNTNVEGSSTACIITL-MKEYLNVVNVGDSGFMLF 124

Query: 153 RENKYIYKSKVQQHEFNHPYQLGTCSD-DLPCLAYEEKILVEAGDIVVAGTDGLLDNIYP 211
           R    IYKS +QQ+ FN PYQLG  S  D P +A E  I V AGD+VV GTDGL DN++ 
Sbjct: 125 RNGNMIYKSSIQQYFFNCPYQLGKSSGCDDPSIAKELIIGVRAGDVVVVGTDGLFDNVFV 184

Query: 212 SEI 214
           SE+
Sbjct: 185 SEM 187


>GSVIVT01029794001 assembled CDS
          Length = 772

 Score =  119 bits (297), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 102/187 (54%), Gaps = 4/187 (2%)

Query: 36  LKMNAGAFYLPKDDKERPQGEDAHFICKEKLTIGVADGVGGWARKGVDAGIYARRLMEN- 94
           L +++GA  LP   K    GEDA+F+  +    GVADGVG W+ +G++ G+YAR +M+N 
Sbjct: 527 LALSSGAALLPHPSKALTGGEDAYFVAFQNW-FGVADGVGQWSLEGINGGLYAREVMDNC 585

Query: 95  SIIALQGEKKGSVNPRKVLQEAYSNTNVKGSSTACIITIDSNNCLHYVNLGDSGFLLFRE 154
             I  + +     NPR++L  + +     G ST  +   +    L   N+GD+GFL+ R 
Sbjct: 586 EEIVFKCKGIPITNPREILNRSVAEAQSPGLSTVLVAYFN-GQVLRVANIGDTGFLIIRH 644

Query: 155 NKYIYKSKVQQHEFNHPYQLGTCSDDLPCLAYEEKILVEAGDIVVAGTDGLLDNIYPSEI 214
                +S    +EFN P ++    DD   L  E KI ++ GD+++  TDGL DNIY  EI
Sbjct: 645 GAVFQRSSPMVYEFNFPLRIEK-GDDPSELIEEYKIDLDEGDVIITATDGLFDNIYEPEI 703

Query: 215 TKILEKA 221
             I+ K+
Sbjct: 704 ISIVSKS 710


>GSVIVT01033263001 assembled CDS
          Length = 229

 Score =  109 bits (273), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 77/117 (65%), Gaps = 4/117 (3%)

Query: 104 KGSVNPRKVLQEAYSNTNVKGSSTACIITIDSNNCLHYVNLGDSGFLLFRENKYIYKSKV 163
           KG +NP  +L  AY  T V GSSTACIIT++   CLH VN+GD+GF+L R  + +Y+S V
Sbjct: 55  KGLINPIDLLNHAYLETKVPGSSTACIITLNEW-CLHAVNIGDNGFILLRNEEILYESPV 113

Query: 164 QQHEFNHPYQLGTCSDDLPCLAYEEKILVEAGDIVVAGTDGLLDNIYPSEITKILEK 220
           QQH +  PYQLG  +D L  +   E   +E GDI++AG+ GL +N++  EI  ++ K
Sbjct: 114 QQHTYKTPYQLGNANDSLEEIKLTE---LEPGDIIIAGSAGLFNNLFTHEIKDLVIK 167


>GSVIVT01007904001 assembled CDS
          Length = 229

 Score =  107 bits (266), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 54/127 (42%), Positives = 80/127 (62%), Gaps = 4/127 (3%)

Query: 92  MENSIIALQGEKKGSVNPRKVLQEAYSNTNVKGSSTACIITIDSNNCLHYVNLGDSGFLL 151
           + N+   +  + KG +NP  +L  AY  T V GSSTACIIT++   CLH VN+GD+GF+L
Sbjct: 43  LVNNCFHIANKIKGFINPIDLLNHAYLETKVPGSSTACIITLNEW-CLHAVNMGDNGFIL 101

Query: 152 FRENKYIYKSKVQQHEFNHPYQLGTCSDDLPCLAYEEKILVEAGDIVVAGTDGLLDNIYP 211
            R  + +Y+S VQQH +  PYQLG  +D    +   E   +E GDI++AG+ GL +N++ 
Sbjct: 102 LRNEEILYESPVQQHTYKTPYQLGKANDSPEEIKLTE---LEPGDIIIAGSAGLFNNLFT 158

Query: 212 SEITKIL 218
            EI  ++
Sbjct: 159 HEIKDLV 165


>GSVIVT01024641001 assembled CDS
          Length = 311

 Score =  106 bits (265), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 102/186 (54%), Gaps = 9/186 (4%)

Query: 40  AGAFYLPKDDKERPQGEDAHFICK-EKLTIGVADGVGGWARKGVDAGIYARRLMENSIIA 98
            G   +P  +K    GEDA F+       + VADGV GWA + VD  ++ + LM N+   
Sbjct: 62  VGTHLIPHPNKVDRGGEDAFFVSSYNGGVVAVADGVSGWAEQNVDPSLFPKELMANAS-D 120

Query: 99  LQGEKKGSVNPRKVLQEAYSNTNVKGSSTACIITIDSNNCLHYVNLGDSGFLLFRENKYI 158
           L G+++ + +P+ +L++A++ T+ KGS+T  +  ++ N  L   ++GD G  + R+ K I
Sbjct: 121 LVGDEEVNYDPQILLKKAHTATSSKGSATVIVAMLEKNGVLKIASVGDCGLRVIRKGKLI 180

Query: 159 YKSKVQQHEFNHPYQLGTCSDDLPCLAYEEKILVEA----GDIVVAGTDGLLDNIYPSEI 214
           + +  Q+H F+ PYQL   S ++    Y +  +       GD +V G+DGL DN++  EI
Sbjct: 181 FSTLPQEHYFDCPYQL---SSEVITQTYLDATVTSVKLLEGDTIVMGSDGLFDNVFDHEI 237

Query: 215 TKILEK 220
              + +
Sbjct: 238 VSTITQ 243