Jatropha Genome Database

JcCB0174101.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0174101.10 - phase: 0 
         (131 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022826001 assembled CDS                                        86   4e-18
GSVIVT01022381001 assembled CDS                                        52   7e-08
GSVIVT01000745001 assembled CDS                                        51   2e-07
GSVIVT01018104001 assembled CDS                                        50   3e-07

>GSVIVT01022826001 assembled CDS
          Length = 379

 Score = 85.9 bits (211), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 38/47 (80%), Positives = 43/47 (91%)

Query: 78  MRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           MRFD+ G SEL+ECDKSTII+R AIPARDLRILGPVFSHSSNIL ++
Sbjct: 1   MRFDRCGQSELLECDKSTIIRRAAIPARDLRILGPVFSHSSNILARE 47


>GSVIVT01022381001 assembled CDS
          Length = 443

 Score = 52.0 bits (123), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query: 75  RLWMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           R W+   + G S L E  K ++++R  +PARDLR+L PV S+ S ILG++
Sbjct: 29  RAWLVVLESGQSHLEELGKHSVMRRTGLPARDLRVLDPVLSYPSTILGRE 78


>GSVIVT01000745001 assembled CDS
          Length = 214

 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 33/48 (68%)

Query: 77  WMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           W+  +  G S +++ DK  I++RV I ARDLRIL P+ S+ S ILG++
Sbjct: 25  WVLMNDNGESTILDVDKYVIMRRVHIHARDLRILDPLLSYPSTILGRE 72


>GSVIVT01018104001 assembled CDS
          Length = 389

 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query: 75  RLWMRFDKFGNSELMECDKSTIIKRVAIPARDLRILGPVFSHSSNILGKD 124
           R W+  D  G   +++ DK  I+ RV I ARDLRIL P+ S+ S ILG++
Sbjct: 23  RNWIMMDCSGEKTVLDLDKYAIMHRVQIHARDLRILDPLLSYPSTILGRE 72