Jatropha Genome Database

JcCB0174071.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0174071.10 - phase: 0 /pseudo
         (158 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035648001 assembled CDS                                       210   2e-55

>GSVIVT01035648001 assembled CDS
          Length = 987

 Score =  210 bits (535), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/113 (89%), Positives = 104/113 (92%)

Query: 25  YEDQVGLMDWHQQYIGKVKDAVFHTQKTGRKRVVVSTEENVIASLDLRHGEIFWRHVLGT 84
           YEDQVGLMDWHQQYIGKVK AVFHTQK GRKRVVVSTEENVIASLDLR G+IFWRHVLG 
Sbjct: 26  YEDQVGLMDWHQQYIGKVKHAVFHTQKAGRKRVVVSTEENVIASLDLRRGDIFWRHVLGP 85

Query: 85  DDVIDGIDIALGKYVITLSSEGSILRAWNLPDGQMVWESFLQGPNHSKSLLLV 137
           +D +D IDIALGKYVITLSSEGSILRAWNLPDGQMVWESFLQGP  SKSLL V
Sbjct: 86  NDAVDEIDIALGKYVITLSSEGSILRAWNLPDGQMVWESFLQGPKPSKSLLSV 138