Jatropha Genome Database

JcCB0173711.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0173711.10 + phase: 2 /partial
         (174 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025529001 assembled CDS                                       229   4e-61

>GSVIVT01025529001 assembled CDS
          Length = 470

 Score =  229 bits (584), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 107/154 (69%), Positives = 118/154 (76%)

Query: 21  QLQACLDAVMQALAKSVAWDGEGATCLIEVTVTGAESEVKAAKIXXXXXXXXXXXXXXYG 80
           QLQACLDAVMQ LAKS+AWDGEGATCLIEV+V GAE+E  AAK+              YG
Sbjct: 317 QLQACLDAVMQGLAKSIAWDGEGATCLIEVSVNGAENEADAAKVARSVASSSLAKAAVYG 376

Query: 81  RDPNWGRXXXXXXXXXXPFHQNNLRVMLGDILLMDNGQPLAFDRAAASNYLRKAGETHGT 140
           RDPNWGR          PF  N L + LG+ILLM+ GQPL FDRAAASNYL+KAGETHGT
Sbjct: 377 RDPNWGRIACAAGYAGIPFQPNKLHISLGEILLMEGGQPLPFDRAAASNYLKKAGETHGT 436

Query: 141 VGIYISVGDGSGHGQAWGCDLSYDYVKINAEYTT 174
           VGI+IS+GDG+G GQAWGCDLSYDYVKINAEYTT
Sbjct: 437 VGIHISIGDGAGRGQAWGCDLSYDYVKINAEYTT 470