Jatropha Genome Database

JcCB0173481.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0173481.10 - phase: 1 /partial
         (161 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011287001 assembled CDS                                       242   7e-65

>GSVIVT01011287001 assembled CDS
          Length = 422

 Score =  242 bits (617), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 114/135 (84%), Positives = 125/135 (92%)

Query: 3   FCEWNMGKVEDGSDSRAVQVVDDKHWDDLVIIIAVVSSRQKETSSTTGMRETVETSLLLQ 62
           F +W MG  E+GSDS AVQ+ D+KHWD+LVIIIAVVSSRQKETSST+GMR++VETSLLLQ
Sbjct: 175 FVKWVMGNEENGSDSIAVQLQDEKHWDELVIIIAVVSSRQKETSSTSGMRDSVETSLLLQ 234

Query: 63  HRAKEVVPKRIIKMEEAIKNRDFASFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIIS 122
           HRAKEVVPKRII+MEEAIKNRDF SFA+LTCADSNQFHAVCLDTSPPIFYMNDTSHRIIS
Sbjct: 235 HRAKEVVPKRIIEMEEAIKNRDFPSFARLTCADSNQFHAVCLDTSPPIFYMNDTSHRIIS 294

Query: 123 CIEKWNCCEGTPQVG 137
           C+EKWN  EGTPQV 
Sbjct: 295 CVEKWNRSEGTPQVA 309