Jatropha Genome Database

JcCB0173361.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0173361.10 + phase: 0 
         (191 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021184001 assembled CDS                                       361   e-100
GSVIVT01003940001 assembled CDS                                       337   2e-93
GSVIVT01024702001 assembled CDS                                       334   2e-92
GSVIVT01004503001 assembled CDS                                       129   6e-31
GSVIVT01005052001 assembled CDS                                       129   8e-31

>GSVIVT01021184001 assembled CDS
          Length = 577

 Score =  361 bits (926), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 167/189 (88%), Positives = 177/189 (93%)

Query: 3   KEMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAARTKRV 62
           ++ML G++AVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQ A+ KRV
Sbjct: 389 QDMLDGNSAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQGAKDKRV 448

Query: 63  IACIGDGSFQVTAQDISTMIRLGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVN 122
           IACIGDGSFQVTAQD+STMIR GQ+TIIFLINNGGYTIEVEIHDGPYNVIKNWDYT L+N
Sbjct: 449 IACIGDGSFQVTAQDVSTMIRCGQRTIIFLINNGGYTIEVEIHDGPYNVIKNWDYTALIN 508

Query: 123 AIHNDEGKCWTAKVRTEEQLREAIATATGEQKGSLCFIEVLVHKDDTSKELLEWGSRVSA 182
           AIHN EGKCWTAKVRTE++L EAIATATG  K SLCFIEV VHKDDTSKELLEWGSRVSA
Sbjct: 509 AIHNGEGKCWTAKVRTEDELTEAIATATGAHKDSLCFIEVFVHKDDTSKELLEWGSRVSA 568

Query: 183 ANSRPPNPQ 191
           AN RPPNPQ
Sbjct: 569 ANGRPPNPQ 577


>GSVIVT01003940001 assembled CDS
          Length = 605

 Score =  337 bits (863), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 157/189 (83%), Positives = 169/189 (89%)

Query: 3   KEMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAARTKRV 62
           ++MLS +TAVIAETGDSWFNCQKL+LP+ CGYEFQMQYGSIGWSVGATLGYAQA   KRV
Sbjct: 417 QKMLSSETAVIAETGDSWFNCQKLKLPKGCGYEFQMQYGSIGWSVGATLGYAQAVPNKRV 476

Query: 63  IACIGDGSFQVTAQDISTMIRLGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVN 122
           I+CIGDGSFQVTAQD+STMIR  Q+TIIFLINNGGYTIEVEIHDGPYNVIKNW+YTGLV+
Sbjct: 477 ISCIGDGSFQVTAQDVSTMIRCEQRTIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVD 536

Query: 123 AIHNDEGKCWTAKVRTEEQLREAIATATGEQKGSLCFIEVLVHKDDTSKELLEWGSRVSA 182
           AIHN EGKCWT KV  EE L  AI TATG +K   CFIEV+ HKDDTSKELLEWGSRVSA
Sbjct: 537 AIHNGEGKCWTTKVVCEEDLINAIETATGSKKDCFCFIEVIAHKDDTSKELLEWGSRVSA 596

Query: 183 ANSRPPNPQ 191
           ANSRPPNPQ
Sbjct: 597 ANSRPPNPQ 605


>GSVIVT01024702001 assembled CDS
          Length = 577

 Score =  334 bits (856), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 156/189 (82%), Positives = 170/189 (89%)

Query: 3   KEMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAARTKRV 62
           +++LS DTAVIAETGDSWFNCQKL+LPE CGYEFQMQYGSIGWSVGA LGYAQ+   KRV
Sbjct: 389 QKLLSHDTAVIAETGDSWFNCQKLKLPEGCGYEFQMQYGSIGWSVGAMLGYAQSVPDKRV 448

Query: 63  IACIGDGSFQVTAQDISTMIRLGQKTIIFLINNGGYTIEVEIHDGPYNVIKNWDYTGLVN 122
           IACIGDGSFQVTAQD+STMIR  QK+IIFLINNGGYTIEVEIHDGPYNVIKNW+YTGLV+
Sbjct: 449 IACIGDGSFQVTAQDVSTMIRCEQKSIIFLINNGGYTIEVEIHDGPYNVIKNWNYTGLVD 508

Query: 123 AIHNDEGKCWTAKVRTEEQLREAIATATGEQKGSLCFIEVLVHKDDTSKELLEWGSRVSA 182
           AIHN EG CWT KV  E++L EAI  ATGE+K  LCFIEV+VHKDDTSKELLEWGSRVS+
Sbjct: 509 AIHNGEGNCWTKKVNNEQELIEAIEIATGEKKDCLCFIEVVVHKDDTSKELLEWGSRVSS 568

Query: 183 ANSRPPNPQ 191
           ANSR PNPQ
Sbjct: 569 ANSRAPNPQ 577


>GSVIVT01004503001 assembled CDS
          Length = 550

 Score =  129 bits (325), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 64/85 (75%), Positives = 68/85 (80%), Gaps = 1/85 (1%)

Query: 3   KEMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAARTKRV 62
           ++MLS +TAVIAET DSWFNCQKL+LP  C YEFQMQYGSIGW VG TLGYAQA   KRV
Sbjct: 170 QKMLSSETAVIAETEDSWFNCQKLKLPRGCRYEFQMQYGSIGWLVGVTLGYAQALPNKRV 229

Query: 63  -IACIGDGSFQVTAQDISTMIRLGQ 86
            IACIGDGSF VT  DISTMI   Q
Sbjct: 230 MIACIGDGSFYVTLLDISTMILYEQ 254


>GSVIVT01005052001 assembled CDS
          Length = 537

 Score =  129 bits (324), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 64/85 (75%), Positives = 68/85 (80%), Gaps = 1/85 (1%)

Query: 3   KEMLSGDTAVIAETGDSWFNCQKLRLPENCGYEFQMQYGSIGWSVGATLGYAQAARTKRV 62
           ++MLS +TAVIAETGDSWFNCQKL+LP  C YEFQMQY SIGW VG TLGYAQA   KRV
Sbjct: 176 QKMLSSETAVIAETGDSWFNCQKLKLPRGCRYEFQMQYRSIGWLVGVTLGYAQAVPNKRV 235

Query: 63  -IACIGDGSFQVTAQDISTMIRLGQ 86
            IACIGDGSF VT  DISTMI   Q
Sbjct: 236 MIACIGDGSFYVTLLDISTMILYEQ 260