Jatropha Genome Database

JcCB0172651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0172651.10 + phase: 2 /partial
         (172 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01018736001 assembled CDS                                       155   1e-38

>GSVIVT01018736001 assembled CDS
          Length = 605

 Score =  155 bits (391), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 89/175 (50%), Positives = 107/175 (61%), Gaps = 6/175 (3%)

Query: 1   RPIADFLHENVLDFISDEAMDAAKDVAXXXXXXXXXXXXFRGILARYNEXXXXXXXXXXX 60
           RP+ DFLHENVLDF+S+EA+D A  VA             RG+LA   E           
Sbjct: 434 RPVVDFLHENVLDFLSEEAIDDASAVASYLSDSDFLLAAHRGMLATSYEAGNVLQSAAAS 493

Query: 61  XXXRGVLFGNSHPSPSRWHAIRRPKLWQVEQSLLLNQKETISQRLTVYGGSSFSNMSDVA 120
              RGVLFGNSHP  SRWHAIRRPKLWQVEQS L N+ E + QRL      S SN+S +A
Sbjct: 494 VAARGVLFGNSHPLASRWHAIRRPKLWQVEQSSLHNKCEILGQRLVAL---STSNVSVIA 550

Query: 121 AEYLPALKSLGDGAS-GFEAHKVHHKG--TWDDSSERMSLDDEEGQISDDEIEDW 172
            EY+P  K L  GAS GFE ++   +G  T  D ++ M LD++E +ISDDEIEDW
Sbjct: 551 TEYIPIFKWLRYGASGGFEDYQALIQGNETELDDNDSMILDEKENEISDDEIEDW 605