Jatropha Genome Database

JcCB0172401.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0172401.10 - phase: 2 /pseudo/partial
         (166 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009559001 assembled CDS                                       202   5e-53

>GSVIVT01009559001 assembled CDS
          Length = 304

 Score =  202 bits (515), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 101/152 (66%), Positives = 116/152 (76%)

Query: 1   AAGSPNVNIGVVGAGTASIFNEVMQSSGQVLDISFTPSKATGKVLASELPKSENKTCTVL 60
           AAG+P V +GVVG+GT S+F EVMQSS Q L ++F PSKATGKVLASELPK  N+TCTVL
Sbjct: 117 AAGAPCVKVGVVGSGTQSVFEEVMQSSKQSLRVAFAPSKATGKVLASELPKDGNRTCTVL 176

Query: 61  YPASAKASNEIEEGLSNRGFEVVRLNTYTTVPVDHVDQMVLKQXXXXXXXXXXXXXXXXX 120
           YPASAKAS EIEEGLS+RGFEV RLNTYTTVPV+ VD+MV KQ                 
Sbjct: 177 YPASAKASGEIEEGLSSRGFEVTRLNTYTTVPVNDVDEMVFKQALSAPVVAVASPSAVRA 236

Query: 121 XXNLISESEQWNNSVACIGETTASAARRLGLK 152
             NL+SESE+W N+VACIGETTA AA+R GL+
Sbjct: 237 WVNLLSESERWGNAVACIGETTALAAKRSGLR 268