Jatropha Genome Database

JcCB0171941.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171941.10 - phase: 0 /pseudo
         (271 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01025266001 assembled CDS                                       311   2e-85
GSVIVT01032091001 assembled CDS                                       270   4e-73
GSVIVT01033317001 assembled CDS                                       266   7e-72
GSVIVT01032092001 assembled CDS                                       253   5e-68
GSVIVT01030279001 assembled CDS                                       149   1e-36
GSVIVT01023938001 assembled CDS                                       130   8e-31

>GSVIVT01025266001 assembled CDS
          Length = 513

 Score =  311 bits (798), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 170/246 (69%), Positives = 187/246 (76%), Gaps = 3/246 (1%)

Query: 1   MAEEDDASYPSMEKKRIPLCIFFKDFRHVLKMDELGLEXXXXXXXXXXXXXXXXXXXLVD 60
           MAEED     S + K IPL IF KD R   KMDELGLE                   LVD
Sbjct: 1   MAEEDGLC-QSRDGKGIPLWIFLKDARFAFKMDELGLEIAQIAFPAALALTADPIASLVD 59

Query: 61  TAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTIGSVNPEVQDSESL 120
           TAFIGQ+GPVELAAVGVSIA+FNQVSRIAIFPLVSVTTSFVAEEDTIG ++ E + S+S+
Sbjct: 60  TAFIGQLGPVELAAVGVSIAVFNQVSRIAIFPLVSVTTSFVAEEDTIGILDSEPEVSKSV 119

Query: 121 ETGSVVNSESKELIPQNVSGEGAYKSKSAMSSFDIAKMESGRRHIPSASSALVIGAILGF 180
           E GS VN E+K+LIP+  SGE  Y  +   S  D  K ES +RHIPSAS+ALV+G ILG 
Sbjct: 120 EMGSAVNGETKKLIPKG-SGERPYDLEMHGSGHDTPKFES-KRHIPSASAALVVGGILGL 177

Query: 181 IQAIFLISGAKPLLNFMGVGSDSPMLRPAQQYLTLRSLGAPAVLLSLAMQGVFRGFKDTK 240
           IQAIFLISGAKP+LNFMGV SDSPML PAQ+YLTLRSLGAPAVLLSLAMQGVFRGFKDTK
Sbjct: 178 IQAIFLISGAKPILNFMGVHSDSPMLAPAQEYLTLRSLGAPAVLLSLAMQGVFRGFKDTK 237

Query: 241 TPLYAT 246
           TPLYAT
Sbjct: 238 TPLYAT 243


>GSVIVT01032091001 assembled CDS
          Length = 542

 Score =  270 bits (691), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 153/263 (58%), Positives = 176/263 (66%), Gaps = 26/263 (9%)

Query: 10  PSM--EKKRIPLCIFFKDFRHVLKMDELGLEXXXXXXXXXXXXXXXXXXXLVDTAFIGQI 67
           PS+   K ++PL +FFKD RHV KMDELG E                   L+DTAFIG I
Sbjct: 11  PSLPQRKWKMPLLVFFKDVRHVFKMDELGSEILRIAFPAALALAADPVASLIDTAFIGHI 70

Query: 68  GPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTIGSVNPE-----------VQD 116
           GPVELAAVGVSIA+FNQ SRI +FPLVS+TTSFVAEEDT+G    E           VQ+
Sbjct: 71  GPVELAAVGVSIAIFNQASRITVFPLVSITTSFVAEEDTVGKKGNEAPKGENSEKASVQN 130

Query: 117 SES------------LETGSVVNSESKELIPQNVSGEGAYKSKSAMS-SFDIAKMESGRR 163
           SE+            LE GS  NSE KELIP++      YK  S  + S +  K++  RR
Sbjct: 131 SETKELEDEDVILENLEKGSNPNSEMKELIPEDDLKTTTYKPPSVSTVSPNRVKLKKERR 190

Query: 164 HIPSASSALVIGAILGFIQAIFLISGAKPLLNFMGVGSDSPMLRPAQQYLTLRSLGAPAV 223
           HIPSAS+ALVIG+ LG  Q IFLI  AKPLL+FMGV S S ML PA++YLTLR+LGAPAV
Sbjct: 191 HIPSASTALVIGSFLGLFQTIFLIFAAKPLLSFMGVKSGSSMLTPARRYLTLRALGAPAV 250

Query: 224 LLSLAMQGVFRGFKDTKTPLYAT 246
           LLSLAMQGVFRGFKDTKTPLYAT
Sbjct: 251 LLSLAMQGVFRGFKDTKTPLYAT 273


>GSVIVT01033317001 assembled CDS
          Length = 507

 Score =  266 bits (680), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 143/231 (61%), Positives = 170/231 (73%), Gaps = 7/231 (3%)

Query: 16  RIPLCIFFKDFRHVLKMDELGLEXXXXXXXXXXXXXXXXXXXLVDTAFIGQIGPVELAAV 75
           ++PL + F+D R+V K DELGLE                   L+DTAFIG IG VELAAV
Sbjct: 14  KVPLSVIFRDTRNVFKKDELGLEIAQIAFPAALALTADPIASLIDTAFIGHIGAVELAAV 73

Query: 76  GVSIALFNQVSRIAIFPLVSVTTSFVAEEDTIGSVNPEVQDSESLETGSVVNSESKELIP 135
           GVSIA+FNQVSRIAIFPLVS+TTSFVAEEDT+G      + +E+LE G  +++E +ELIP
Sbjct: 74  GVSIAVFNQVSRIAIFPLVSITTSFVAEEDTVGR-----RTNENLEKGLAIDNEMEELIP 128

Query: 136 QNVSGEGAYKSKSAMSSFDIAKMESGRRHIPSASSALVIGAILGFIQAIFLISGAKPLLN 195
              S   +  S++  ++ ++ + E  RRHIPSASSALVIG +LG IQA+FLI  AK +LN
Sbjct: 129 HIDSMHNS-PSRTVNNTKNM-EFEHERRHIPSASSALVIGGVLGLIQALFLIFSAKSILN 186

Query: 196 FMGVGSDSPMLRPAQQYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYAT 246
           FMGV S SPML PA QYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYAT
Sbjct: 187 FMGVNSGSPMLAPAMQYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYAT 237


>GSVIVT01032092001 assembled CDS
          Length = 536

 Score =  253 bits (647), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 144/253 (56%), Positives = 167/253 (66%), Gaps = 16/253 (6%)

Query: 10  PSMEKKRIPLCIFFKDFRHVLKMDELGLEXXXXXXXXXXXXXXXXXXXLVDTAFIGQIGP 69
           P   K +IPL +FFKD   V KMDELG E                   L+DTAFIG +GP
Sbjct: 9   PPERKWKIPLLVFFKDASLVFKMDELGSEILCIAFPAALALAADPIASLIDTAFIGHLGP 68

Query: 70  VELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTIGSVNPEVQDSESLETGSVVNSE 129
           V LAAVGVSIA+FNQ SRIA+FPLVS+TTS VAEEDTI  ++ EV   E+ E  S  N E
Sbjct: 69  VALAAVGVSIAIFNQASRIAVFPLVSITTSLVAEEDTIERISNEVPKGENSEKVSDKNCE 128

Query: 130 SKELIPQN----VSGEGAYKSKSAMSSF------------DIAKMESGRRHIPSASSALV 173
           +KEL   +    +  EG+ K     +S             + AK +  +RHIPSAS+ALV
Sbjct: 129 TKELKDADAMLEILEEGSTKDSEMKASMPEDAPCVSTGGRNKAKSKREKRHIPSASTALV 188

Query: 174 IGAILGFIQAIFLISGAKPLLNFMGVGSDSPMLRPAQQYLTLRSLGAPAVLLSLAMQGVF 233
           IG +LG IQ +FLI  AKPLL+FMGV S SPML PA +YLTLRSLGAPAVLLSLAMQGVF
Sbjct: 189 IGGLLGLIQTLFLIFAAKPLLSFMGVKSGSPMLPPALKYLTLRSLGAPAVLLSLAMQGVF 248

Query: 234 RGFKDTKTPLYAT 246
           RGFKDTKTPLYAT
Sbjct: 249 RGFKDTKTPLYAT 261


>GSVIVT01030279001 assembled CDS
          Length = 558

 Score =  149 bits (377), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/228 (39%), Positives = 128/228 (56%), Gaps = 35/228 (15%)

Query: 21  IFFKDFRHVLKMDELGLEXXXXXXXXXXXXXXXXXXXLVDTAFIGQIGPVELAAVGVSIA 80
           +  +  R     DELGLE                   LVDTAF+G +G VELAAVGVS++
Sbjct: 87  VLIRRLRDGFGADELGLEILSIALPAALALAADPIASLVDTAFVGHLGSVELAAVGVSVS 146

Query: 81  LFNQVSRIAIFPLVSVTTSFVAEEDTIGSVNPEVQDSESLETGS-VVNSESKELIPQNVS 139
           +FN VS++   PL+++TTSFVAEE  + S +    ++ES++ G   VN   ++++     
Sbjct: 147 VFNLVSKLFNVPLLNITTSFVAEEQALVSKS----ENESIQIGQDHVNGHKRKML----- 197

Query: 140 GEGAYKSKSAMSSFDIAKMESGRRHIPSASSALVIGAILGFIQAIFLISGAKPLLNFMGV 199
                                    +PS S++L + A +G  +A+ L  G+  L+N MG+
Sbjct: 198 -------------------------LPSVSTSLALAAGIGIAEAVALSVGSGFLMNIMGI 232

Query: 200 GSDSPMLRPAQQYLTLRSLGAPAVLLSLAMQGVFRGFKDTKTPLYATG 247
             DSPM  PA+Q+LTLR+ GAP ++++LA QG FRGFKDTKTPLYA G
Sbjct: 233 PVDSPMRVPAEQFLTLRAFGAPPIVIALAAQGTFRGFKDTKTPLYAVG 280


>GSVIVT01023938001 assembled CDS
          Length = 604

 Score =  130 bits (326), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 76/191 (39%), Positives = 118/191 (61%), Gaps = 27/191 (14%)

Query: 58  LVDTAFIGQIGPVELAAVGVSIALFNQVSRIAIFPLVSVTTSFVAEEDTIGSVNPEVQDS 117
           L++TA+IG++GPVELA+ GVSI++FN +S++   PL+S++TSFVAE+ +  ++N      
Sbjct: 158 LMETAYIGRLGPVELASAGVSISIFNIISKLFNIPLLSISTSFVAEDISKNAIN------ 211

Query: 118 ESLETGSVVNSESKELIPQNVSGEGAYKSKSAMSSFDIAKMESGRRHIPSASSALVIGAI 177
                    NS S+E           Y+ +S   +  +   E  R  + S S+AL++   
Sbjct: 212 ---------NSASEEF----------YQEESTNGTPFVGVTE--RMQLSSVSTALLLAVG 250

Query: 178 LGFIQAIFLISGAKPLLNFMGVGSDSPMLRPAQQYLTLRSLGAPAVLLSLAMQGVFRGFK 237
           +G  +A  L  G+   LN MG+   S M  PA+++L+LR+LGAPAV++SLA+QG+ RGFK
Sbjct: 251 IGIFEAFALYFGSGWFLNLMGIPLASSMHAPARRFLSLRALGAPAVVVSLALQGILRGFK 310

Query: 238 DTKTPLYATGM 248
           DTKTP+   G+
Sbjct: 311 DTKTPVLCLGV 321