Jatropha Genome Database

JcCB0171801.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171801.10 - phase: 0 
         (142 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033497001 assembled CDS                                       137   2e-33

>GSVIVT01033497001 assembled CDS
          Length = 136

 Score =  137 bits (344), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 72/134 (53%), Positives = 95/134 (70%), Gaps = 3/134 (2%)

Query: 9   TTTVQHVTKKSSDELLRKFAEVEDDNDEAXXXXXXXXXXXXXXXQARKEVACESPSHYSN 68
           +  VQHVTK SSD+LLRKFA+     D+A               ++R+    ESP + S+
Sbjct: 4   SAKVQHVTKASSDQLLRKFAQA--GGDDAPAKELRVVKRRKKSRRSREGHNRESPPNGSS 61

Query: 69  SLVEKRSLLPPVTRKSV-LLRQLGIGRSQLRARDFKNKSVFVAIEKTWRKTLEGASRVLL 127
            +VEKRSLLPP TR+S  LL QLGIGRSQLR RD +NKS+  AIEKTWR+T++GAS+VL+
Sbjct: 62  GVVEKRSLLPPATRRSAALLLQLGIGRSQLRVRDLRNKSILGAIEKTWRRTIKGASKVLI 121

Query: 128 EKHYNRHRRLISDV 141
           E+HYN+H+RLI++ 
Sbjct: 122 ERHYNQHKRLINEA 135