Jatropha Genome Database

JcCB0171671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171671.10 + phase: 1 /pseudo/partial
         (220 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011108001 assembled CDS                                       215   1e-56
GSVIVT01017888001 assembled CDS                                       214   3e-56
GSVIVT01036301001 assembled CDS                                        69   2e-12

>GSVIVT01011108001 assembled CDS
          Length = 263

 Score =  215 bits (548), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 108/149 (72%), Positives = 123/149 (82%)

Query: 57  AAGFTAFISLPIEKALKDLLLWIKHDLGPWGPLVLAAVYIPLTILAVPASVLTLGGGYLF 116
           AA  TA ++LPIEK LK  LLWIK DLGPWGPLVLA  YIPLT+LAVPAS+LT+GGGYLF
Sbjct: 9   AAISTACLTLPIEKILKGFLLWIKRDLGPWGPLVLAVAYIPLTVLAVPASILTIGGGYLF 68

Query: 117 GLPVGFVADSIGATIGATAAFLVGRTIGRSYVMSKLKNYPKFEAVAIAVRKSGFKIXXXX 176
           GLPVGF ADSIGATIGATAAF++GRT+GRSYV SKLKNYPKF+A+A+A+++SGFKI    
Sbjct: 69  GLPVGFFADSIGATIGATAAFILGRTLGRSYVTSKLKNYPKFQAIAVAIQRSGFKIVLLL 128

Query: 177 XXXXXXXFNMLNYLLSVTPVRTKDFMLAS 205
                  FNMLNYLLSVTPV    +MLAS
Sbjct: 129 RLVPLLPFNMLNYLLSVTPVTLGQYMLAS 157


>GSVIVT01017888001 assembled CDS
          Length = 274

 Score =  214 bits (544), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 110/161 (68%), Positives = 124/161 (77%)

Query: 45  SAFRFVXXXXXXAAGFTAFISLPIEKALKDLLLWIKHDLGPWGPLVLAAVYIPLTILAVP 104
           S  R        AA   A  +LP+EK LKD LLWI+ DLGPWGPL LA  YIPLT+LAVP
Sbjct: 7   SFLRITFLLLLIAAIAVACFTLPVEKILKDFLLWIEQDLGPWGPLALAVAYIPLTVLAVP 66

Query: 105 ASVLTLGGGYLFGLPVGFVADSIGATIGATAAFLVGRTIGRSYVMSKLKNYPKFEAVAIA 164
           ASVLTLGGGYLFGLPVGFVADSIGAT+GA AAFL+GRTIGRSYV+SKLK+YP+F AVAIA
Sbjct: 67  ASVLTLGGGYLFGLPVGFVADSIGATVGAGAAFLLGRTIGRSYVISKLKDYPQFRAVAIA 126

Query: 165 VRKSGFKIXXXXXXXXXXXFNMLNYLLSVTPVRTKDFMLAS 205
           +++SGFKI           FNMLNYLLSVTPV   ++MLAS
Sbjct: 127 IQRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVPVWEYMLAS 167


>GSVIVT01036301001 assembled CDS
          Length = 309

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 65/122 (53%)

Query: 84  GPWGPLVLAAVYIPLTILAVPASVLTLGGGYLFGLPVGFVADSIGATIGATAAFLVGRTI 143
           GP G  +  AVY  L ILA+PA  LT+  G LFG   G +  SI  T+ A+ AFL+ R  
Sbjct: 122 GPAGYALFVAVYAGLEILAIPAIPLTMSAGLLFGSFTGTIIVSISGTVAASVAFLIARYF 181

Query: 144 GRSYVMSKLKNYPKFEAVAIAVRKSGFKIXXXXXXXXXXXFNMLNYLLSVTPVRTKDFML 203
            R  ++  ++   KF A+  A+ ++GF++           F++ NYL  +T V+   ++L
Sbjct: 182 ARERILKLVEGNKKFLAIDKAIGENGFRVVTLLRLSPLLPFSLGNYLYGLTSVKFVPYVL 241

Query: 204 AS 205
            S
Sbjct: 242 GS 243