Jatropha Genome Database

JcCB0171551.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171551.10 + phase: 0 /pseudo/partial
         (396 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01035662001 assembled CDS                                       641   0.0  
GSVIVT01015367001 assembled CDS                                       616   e-177
GSVIVT01035914001 assembled CDS                                       410   e-115
GSVIVT01020739001 assembled CDS                                       338   4e-93
GSVIVT01030218001 assembled CDS                                       327   5e-90
GSVIVT01017971001 assembled CDS                                        73   3e-13

>GSVIVT01035662001 assembled CDS
          Length = 422

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/351 (88%), Positives = 327/351 (93%), Gaps = 1/351 (0%)

Query: 6   ISASPTSGFQ-GNSVFSHVDRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVL 64
           ISAS TSG   G SVF HV +APEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVL
Sbjct: 7   ISASATSGSDFGGSVFDHVVQAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVL 66

Query: 65  NVVRKAEQQLVNDRSRVKEYLPITGLADFNKLSAKLIFGADSNAIQENRVTTVQCLSGTG 124
           NVVR+AEQ LVNDRSRVKEYLPI GLA+FNKLSAKL+FGADS AIQ  RVTTVQCLSGTG
Sbjct: 67  NVVRRAEQLLVNDRSRVKEYLPIVGLAEFNKLSAKLMFGADSPAIQVKRVTTVQCLSGTG 126

Query: 125 SLRVGAEFLARHYHQRIIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPTTRGLNFQGLLED 184
           SLRVGAEFLARH+HQR IYIPQPTWGNH K+FTLAGLSVKTYRYYDP TRGLNFQGLLED
Sbjct: 127 SLRVGAEFLARHHHQRTIYIPQPTWGNHGKIFTLAGLSVKTYRYYDPATRGLNFQGLLED 186

Query: 185 LGSAPSGAIVLLHACAHNPTGVDPTLQQWDQIRQLMRSKGLMPFFDSAYQGFASGSLDSD 244
           L  APSGAIVLLHACAHNPTGVDPTLQQW+QIRQL+R KGL+PFFDSAYQGFASGSLD+D
Sbjct: 187 LSLAPSGAIVLLHACAHNPTGVDPTLQQWEQIRQLIRLKGLLPFFDSAYQGFASGSLDAD 246

Query: 245 AQSVRMFVADGGELLVAQSYAKNMGLYGERVGALSIVCRTADVASRVESQLKLVIRPMYS 304
           AQSVRMFVADGGE L AQSYAKNMGLYGERVGALSIVC+TADVASRVESQ+KLVIRPM+S
Sbjct: 247 AQSVRMFVADGGECLAAQSYAKNMGLYGERVGALSIVCKTADVASRVESQVKLVIRPMFS 306

Query: 305 NPPIHGASIVAFILKDRNLYNEWTIELKAMADRIICMRQQLFDALHARGFP 355
           NPPIHGASIVA ILK+R++YNEWT+ELKAMADRII MRQQLFDAL ARG P
Sbjct: 307 NPPIHGASIVAIILKNRDMYNEWTVELKAMADRIISMRQQLFDALRARGTP 357


>GSVIVT01015367001 assembled CDS
          Length = 411

 Score =  616 bits (1589), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 294/338 (86%), Positives = 315/338 (93%)

Query: 18  SVFSHVDRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLVND 77
           SVFS++ RAPEDPILGVTVAYNKD SP+KLNLGVGAYRTEEGKPLVLNVVR+AEQ LVND
Sbjct: 9   SVFSNIVRAPEDPILGVTVAYNKDTSPIKLNLGVGAYRTEEGKPLVLNVVRRAEQLLVND 68

Query: 78  RSRVKEYLPITGLADFNKLSAKLIFGADSNAIQENRVTTVQCLSGTGSLRVGAEFLARHY 137
            SRVKEYLPI GLA+FNKLSAKLIFGADS AIQENRV TVQ LSGTGSLR+GAEFLARHY
Sbjct: 69  PSRVKEYLPIVGLAEFNKLSAKLIFGADSPAIQENRVATVQGLSGTGSLRIGAEFLARHY 128

Query: 138 HQRIIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPTTRGLNFQGLLEDLGSAPSGAIVLLH 197
           +Q  IYIP PTWGNHPK+FT+AGLSVKTYRYYDP TRGL+F+GLLEDLG+AP+GAIVLLH
Sbjct: 129 YQHTIYIPVPTWGNHPKIFTIAGLSVKTYRYYDPETRGLDFKGLLEDLGAAPTGAIVLLH 188

Query: 198 ACAHNPTGVDPTLQQWDQIRQLMRSKGLMPFFDSAYQGFASGSLDSDAQSVRMFVADGGE 257
           ACAHNPTGVDPTL+QW+QIRQLMRSKGL+PFFDSAYQGFASGSLD+DAQSVRMFVADGGE
Sbjct: 189 ACAHNPTGVDPTLEQWEQIRQLMRSKGLLPFFDSAYQGFASGSLDADAQSVRMFVADGGE 248

Query: 258 LLVAQSYAKNMGLYGERVGALSIVCRTADVASRVESQLKLVIRPMYSNPPIHGASIVAFI 317
            L AQSYAKNMGLYGERVGALSIVC+ ADVASRVESQLKLVIRPMYSNPPIHGASIVA I
Sbjct: 249 CLAAQSYAKNMGLYGERVGALSIVCKAADVASRVESQLKLVIRPMYSNPPIHGASIVATI 308

Query: 318 LKDRNLYNEWTIELKAMADRIICMRQQLFDALHARGFP 355
           LKD ++YNEWT+ELKAMADRII MRQ LFD L  RG P
Sbjct: 309 LKDSDMYNEWTLELKAMADRIISMRQLLFDTLRDRGTP 346


>GSVIVT01035914001 assembled CDS
          Length = 462

 Score =  410 bits (1053), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/335 (58%), Positives = 252/335 (75%), Gaps = 1/335 (0%)

Query: 18  SVFSHVDRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLVND 77
           S F  V  AP DPILGV+ A+  D S +KLNLGVGAYRTEE +P VLNVV+KAE  L+ +
Sbjct: 60  SRFEGVTMAPPDPILGVSEAFRADNSEMKLNLGVGAYRTEELQPYVLNVVKKAEN-LMLE 118

Query: 78  RSRVKEYLPITGLADFNKLSAKLIFGADSNAIQENRVTTVQCLSGTGSLRVGAEFLARHY 137
           R   KEYLPI GLA FNK++A+L+FGA +  I++ RV TVQ LSGTGSLR+ A  + R++
Sbjct: 119 RGENKEYLPIEGLAAFNKVTAELLFGAGNPVIEQQRVATVQGLSGTGSLRLAAALIERYF 178

Query: 138 HQRIIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPTTRGLNFQGLLEDLGSAPSGAIVLLH 197
               + I  PTWGNH  +F  A +    YRYYDP T GL+F G++ D+ +AP G+ VLLH
Sbjct: 179 PGAKVLISSPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFDGMISDIKAAPEGSFVLLH 238

Query: 198 ACAHNPTGVDPTLQQWDQIRQLMRSKGLMPFFDSAYQGFASGSLDSDAQSVRMFVADGGE 257
            CAHNPTG+DPT +QW++I  +++ K  +PFFD AYQGFASGSLD+DA SVR+F A G E
Sbjct: 239 GCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADASSVRLFAARGME 298

Query: 258 LLVAQSYAKNMGLYGERVGALSIVCRTADVASRVESQLKLVIRPMYSNPPIHGASIVAFI 317
           LLVAQSY+KN+GLY ER+GA+++VC +AD A+RV+SQLK + RPMYSNPPIHGA IVA +
Sbjct: 299 LLVAQSYSKNLGLYAERIGAINVVCSSADAAARVKSQLKRIARPMYSNPPIHGARIVANV 358

Query: 318 LKDRNLYNEWTIELKAMADRIICMRQQLFDALHAR 352
           + D  L+NEW  E++ MA RI  +RQ+LFD+L A+
Sbjct: 359 VGDPALFNEWKEEMELMAGRIKNVRQKLFDSLSAK 393


>GSVIVT01020739001 assembled CDS
          Length = 423

 Score =  338 bits (866), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 167/340 (49%), Positives = 228/340 (67%), Gaps = 2/340 (0%)

Query: 17  NSVFSHVDRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLVN 76
           +S +  V+ A +DPILGVT A+  DPSP K+N+GVGAYR + GKP+VL  VR+AE+++  
Sbjct: 23  SSWWGSVEPAAKDPILGVTEAFLADPSPDKVNVGVGAYRDDNGKPVVLECVREAERRIAG 82

Query: 77  DRSRVKEYLPITGLADFNKLSAKLIFGADSNAIQENRVTTVQCLSGTGSLRVGAEFLARH 136
             +   EYLP+ G  +  + + KL +G +S  I++ R+  VQ LSGTG+ R+ A+F  R 
Sbjct: 83  KLN--MEYLPMGGSVNMVEETLKLAYGENSEFIKDKRIAAVQALSGTGACRLFADFQKRF 140

Query: 137 YHQRIIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPTTRGLNFQGLLEDLGSAPSGAIVLL 196
                IYIP PTW NH  ++  A +  +T+ YY P T+GL+F  L++D+ +AP+G+  LL
Sbjct: 141 RPDSQIYIPVPTWANHHNIWRDAQVPQRTFHYYHPETKGLDFASLMDDVKNAPNGSFFLL 200

Query: 197 HACAHNPTGVDPTLQQWDQIRQLMRSKGLMPFFDSAYQGFASGSLDSDAQSVRMFVADGG 256
           HACAHNPTGVDP+ +QW +I    + KG   FFD AYQGFASG  + DA+S+++F+ DG 
Sbjct: 201 HACAHNPTGVDPSEEQWKEISYQFKVKGHFAFFDMAYQGFASGDPERDAKSIKIFLEDGH 260

Query: 257 ELLVAQSYAKNMGLYGERVGALSIVCRTADVASRVESQLKLVIRPMYSNPPIHGASIVAF 316
            + +AQSYAKNMGLYG+RVG LS++C     A  V+SQL+ + RPMYSNPP+ GA IV+ 
Sbjct: 261 LIGIAQSYAKNMGLYGQRVGCLSLLCEDEKQAVAVKSQLQQIARPMYSNPPVQGALIVST 320

Query: 317 ILKDRNLYNEWTIELKAMADRIICMRQQLFDALHARGFPF 356
           IL D  L   W  E+K MADRII MR  L + L   G P 
Sbjct: 321 ILGDPELKKLWLKEVKVMADRIIGMRTALRENLEKLGSPL 360


>GSVIVT01030218001 assembled CDS
          Length = 427

 Score =  327 bits (839), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 163/340 (47%), Positives = 222/340 (65%), Gaps = 8/340 (2%)

Query: 20  FSHVDRAPEDPILGVTVAYNKDPSPVKLNLGVGAYRTEEGKPLVLNVVRKAEQQLVNDRS 79
           + HV  AP+DPI+ VT A+  D SP K+NLGVGAYR ++G+P+VL  VR  E ++     
Sbjct: 30  WDHVGHAPKDPIMSVTEAFLSDTSPNKINLGVGAYRDDDGRPVVLQCVRDGEVKIAG--- 86

Query: 80  RVKEYLPITGLADFNKL---SAKLIFGADSNAIQENRVTTVQCLSGTGSLRVGAEFLARH 136
              E+L     +  +KL   S KLI+G +++ I+E R   VQ LSGTG+ R+ AEF  R 
Sbjct: 87  --TEFLESVSASVSSKLVEESVKLIYGKEADFIKEGRFAGVQALSGTGACRLFAEFQRRF 144

Query: 137 YHQRIIYIPQPTWGNHPKVFTLAGLSVKTYRYYDPTTRGLNFQGLLEDLGSAPSGAIVLL 196
           Y Q  IY+P PTW NH  ++  A +  +T+ YY P ++GL+F  L++D+ +AP  +  LL
Sbjct: 145 YPQSRIYLPIPTWSNHHNIWRDAQVPGRTFHYYHPDSKGLHFAALMDDIKNAPDRSFFLL 204

Query: 197 HACAHNPTGVDPTLQQWDQIRQLMRSKGLMPFFDSAYQGFASGSLDSDAQSVRMFVADGG 256
           H CAHNPTGVDPT +QW +I  L + K   PFFD AYQGFASG LD DA+++R+F+ DG 
Sbjct: 205 HPCAHNPTGVDPTEEQWREISNLFKVKNHFPFFDMAYQGFASGDLDKDAKAIRIFLEDGH 264

Query: 257 ELLVAQSYAKNMGLYGERVGALSIVCRTADVASRVESQLKLVIRPMYSNPPIHGASIVAF 316
            +  AQS+AKNMGLYG RVG LS++C  A  A  ++SQL+ + R MYS+PP+HG  +V+ 
Sbjct: 265 LIGCAQSFAKNMGLYGHRVGCLSVLCVDAKQAVAIKSQLQHITRAMYSSPPVHGILLVST 324

Query: 317 ILKDRNLYNEWTIELKAMADRIICMRQQLFDALHARGFPF 356
           IL D +L   W  ELK MA+RI  MR  L ++L   G P 
Sbjct: 325 ILSDPHLKELWKKELKVMANRIHRMRSTLHESLKKLGSPL 364


>GSVIVT01017971001 assembled CDS
          Length = 110

 Score = 72.8 bits (177), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 31/43 (72%), Positives = 36/43 (83%)

Query: 184 DLGSAPSGAIVLLHACAHNPTGVDPTLQQWDQIRQLMRSKGLM 226
           DL  AP+GAIVLL  CAHNPTGVDPTL+QW+QI QLM  KG++
Sbjct: 38  DLSVAPAGAIVLLRTCAHNPTGVDPTLEQWEQIIQLMSLKGMV 80