Jatropha Genome Database

JcCB0171531.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171531.10 - phase: 0 /partial
         (131 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01015824001 assembled CDS                                       156   2e-39
GSVIVT01015821001 assembled CDS                                       128   7e-31

>GSVIVT01015824001 assembled CDS
          Length = 522

 Score =  156 bits (395), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 71/116 (61%), Positives = 95/116 (81%), Gaps = 1/116 (0%)

Query: 1   MVINKILRSTLKN-QLGSHSKHVAASGSSQKHLASAPCLAKLYGTEASLQKDDSTTDSRD 59
           M+   ++RSTL+N Q  S+  HVAA+ S Q+HL  AP LA+   TEAS+Q++D+ T+ ++
Sbjct: 1   MIFRNLVRSTLRNTQAVSYKNHVAAARSLQEHLVRAPVLARWNSTEASMQREDAETELKN 60

Query: 60  GRGYKGHDMLAPFTAGWQSTDLHPLVIDKSEGSYVYDINGKKYLDSLAGLWCTALG 115
            + +KGHDMLAPFTAGWQ++D +PLVI+KS+G+YV+DINGKKYLDSLAGLWCTALG
Sbjct: 61  AKEFKGHDMLAPFTAGWQASDTNPLVIEKSKGAYVWDINGKKYLDSLAGLWCTALG 116


>GSVIVT01015821001 assembled CDS
          Length = 493

 Score =  128 bits (322), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 59/86 (68%), Positives = 71/86 (82%), Gaps = 2/86 (2%)

Query: 30  KHLASAPCLAKLYGTEASLQKDDSTTDSRDGRGYKGHDMLAPFTAGWQSTDLHPLVIDKS 89
           KHL  AP LAK   TE SLQK+DS T  ++ +G+KGHDML+PFT GWQST+L PL+I++S
Sbjct: 2   KHLHPAPALAKCSSTETSLQKEDSAT--KNAKGFKGHDMLSPFTTGWQSTNLDPLLIERS 59

Query: 90  EGSYVYDINGKKYLDSLAGLWCTALG 115
           EG YVYD NG+KYLD+LAGLWCTALG
Sbjct: 60  EGPYVYDSNGRKYLDALAGLWCTALG 85