Jatropha Genome Database
- JcCB0171281.20
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0171281.20 + phase: 0 /pseudo/partial
(224 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01005195001 assembled CDS 257 3e-69
GSVIVT01023350001 assembled CDS 229 7e-61
GSVIVT01008734001 assembled CDS 217 3e-57
GSVIVT01019879001 assembled CDS 179 7e-46
GSVIVT01017316001 assembled CDS 93 1e-19
GSVIVT01015543001 assembled CDS 83 8e-17
GSVIVT01027587001 assembled CDS 81 4e-16
GSVIVT01015542001 assembled CDS 75 3e-14
GSVIVT01035853001 assembled CDS 69 1e-12
GSVIVT01013532001 assembled CDS 52 2e-07
GSVIVT01021653001 assembled CDS 51 5e-07
GSVIVT01007329001 assembled CDS 50 1e-06
GSVIVT01016876001 assembled CDS 49 2e-06
GSVIVT01031025001 assembled CDS 48 3e-06
GSVIVT01016258001 assembled CDS 48 3e-06
>GSVIVT01005195001 assembled CDS
Length = 1607
Score = 257 bits (657), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 121/226 (53%), Positives = 163/226 (72%), Gaps = 4/226 (1%)
Query: 1 MAEESMVAGMYIHGDLDLKIIEARRLPNMDLLTERIRRCLLAFDNCRKPCLEET---KHE 57
MA+ + +Y+HGDLDLKI++AR LPNMDL+TE +RRC D C+ P + K
Sbjct: 673 MADTASQRVIYLHGDLDLKILKARDLPNMDLVTEHVRRCFTLCDACKTPSAGKDPGDKRL 732
Query: 58 PPHR-IITSDPYVTVCLAGATVARTRVISNTQNPFWNEHFKIPVAHPADHVEFHVKDNDV 116
HR IITSDPYVTVC+ ATVARTRVISNTQNP+WNE+F I +AHP ++EF VKDND+
Sbjct: 733 DHHRKIITSDPYVTVCVPQATVARTRVISNTQNPYWNENFYISLAHPVANLEFQVKDNDL 792
Query: 117 FGADLIGIASVPVEKLISGETISEWLSIIGPYGKPPKPDSAIRIEMNFMQCQENPLYQYG 176
FGA++IG+A +P E++ +GE IS W +IG GK PKP +A++IE+ F ++NP Y+ G
Sbjct: 793 FGAEVIGVARIPAERIATGEHISGWFPVIGANGKQPKPTTALQIEIKFTPFEQNPFYRTG 852
Query: 177 IAASPNNFGIENCYFPVRRGSSVTLYQDAHVPDSFSPEIKLENGDV 222
IA P + G+ + YFP+R+G TLYQDAHVP+ P+I+++ G V
Sbjct: 853 IAGDPEHLGVRHTYFPLRKGGLATLYQDAHVPEGLLPDIEVDGGQV 898
Score = 251 bits (640), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 121/220 (55%), Positives = 158/220 (71%), Gaps = 8/220 (3%)
Query: 10 MYIHGDLDLKIIEARRLPNMDLLTERIRRCLLAFDNCRKPCLEETKHEPPHR------II 63
+Y++GDLDLKI+EAR LPNMDLL + RC + + ++P + + P R II
Sbjct: 394 VYLNGDLDLKILEARHLPNMDLLALNLSRCFASCEARKRPSSPD-RQRPGDRKDRHTNII 452
Query: 64 TSDPYVTVCLAGATVARTRVISNTQNPFWNEHFKIPVAHPADHVEFHVKDNDVFGADLIG 123
TSDPYV VC+ AT+ARTRVISNTQNP+WNE F IP+AHP +++F VK+ND+ GA+L+G
Sbjct: 453 TSDPYVKVCVPQATLARTRVISNTQNPYWNERFSIPLAHPLANLKFEVKENDLLGAELMG 512
Query: 124 IASVPVEKLISGETISEWLSIIGPYGKPPKPDSAIRIEMNFMQCQENPLYQYGIAASPNN 183
+P EKL SG+ IS W +IGP GKPPKP++A+RIEM F C++NP YQ GIA P +
Sbjct: 513 TVLIPAEKLASGDPISGWFPVIGPLGKPPKPNTALRIEMQFTPCEKNPHYQRGIAGHPEH 572
Query: 184 FGIENCYFPVRRGSSVTLYQDAHVP-DSFSPEIKLENGDV 222
G+ YFP+RRG SV LYQDAH P ++ SPEI+L+ G V
Sbjct: 573 MGVHQTYFPLRRGGSVALYQDAHSPGEALSPEIELDGGIV 612
>GSVIVT01023350001 assembled CDS
Length = 842
Score = 229 bits (584), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 111/214 (51%), Positives = 137/214 (64%), Gaps = 16/214 (7%)
Query: 10 MYIHGDLDLKIIEARRLPNMDLLTERIRRCLLAFDNCRKPCLEETKHEPPHR-IITSDPY 68
+++HG+LDL I+EA+ LPNMDL TER+RRC F +C P KH H IITSDPY
Sbjct: 23 VFLHGELDLWILEAKSLPNMDLATERVRRCFNMFGSCTSPFKIRHKHSSKHHSIITSDPY 82
Query: 69 VTVCLAGATVARTRVISNTQNPFWNEHFKIPVAHPADHVEFHVKDNDVFGADLIGIASVP 128
V+VCLAGAT+A+TRVI N++NP W EHF +PVAHP VEFHVKDND+ GA LIG+ +
Sbjct: 83 VSVCLAGATIAQTRVIPNSENPSWGEHFCVPVAHPVMKVEFHVKDNDILGAQLIGVVGIS 142
Query: 129 VEKLISGETISEWLSIIGPYGKPPKPDSAIRIEMNFMQCQENPLYQYGIAASPNNFGIEN 188
VEKLISG +S W I+G G P KP P G+ A G+ N
Sbjct: 143 VEKLISGNAVSGWFPIVGSQGNPLKP---------------YPELHDGVGAGSGYLGVPN 187
Query: 189 CYFPVRRGSSVTLYQDAHVPDSFSPEIKLENGDV 222
YFP+ +G S+TLYQDAHVP PEI L+ G +
Sbjct: 188 TYFPLHKGGSITLYQDAHVPKGMLPEILLDGGKI 221
>GSVIVT01008734001 assembled CDS
Length = 823
Score = 217 bits (553), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 114/222 (51%), Positives = 139/222 (62%), Gaps = 48/222 (21%)
Query: 1 MAEESMVAGMYIHGDLDLKIIEARRLPNMDLLTERIRRCLLAFDNCRKPCLEETKHEPPH 60
MA++S +Y+HGDLDL IIEAR LPNMDL++ERIRRC AFD+CR P K H
Sbjct: 1 MADDSETI-VYLHGDLDLNIIEARYLPNMDLMSERIRRCFTAFDSCRAPFSGGRKKGRHH 59
Query: 61 RIITSDPYVTVCLAGATVARTRVISNTQNPFWNEHFKIPVAHPADHVEFHVKDNDVFGAD 120
+IITSDPYVTVCLAGATVARTRVISN+Q+P WNEH KIP+AHP VEF VKDNDVFGAD
Sbjct: 60 KIITSDPYVTVCLAGATVARTRVISNSQHPVWNEHLKIPLAHPVSCVEFQVKDNDVFGAD 119
Query: 121 LIGIASVPVEKLISGETISEWLSIIGPYGKPPKPDSAIRIEMNFMQCQENPLYQYGIAAS 180
+IG A+V E++ +
Sbjct: 120 MIGTATVSAERIRT---------------------------------------------- 133
Query: 181 PNNFGIENCYFPVRRGSSVTLYQDAHVPDSFSPEIKLENGDV 222
++FG++ YFPVR G SVTLYQDAHVP+ PE++L++G V
Sbjct: 134 -DHFGVKQSYFPVRLGGSVTLYQDAHVPNGMLPELELDDGVV 174
>GSVIVT01019879001 assembled CDS
Length = 839
Score = 179 bits (455), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 87/208 (41%), Positives = 125/208 (60%), Gaps = 15/208 (7%)
Query: 12 IHGDLDLKIIEARRLPNMDLLTERIRRCLLAFDNCRKPCLEETKHEPPHRIITSDPYVTV 71
+HG+LD+ + EA+ LPNMD+ + F PH+I TSDPYVT+
Sbjct: 36 LHGNLDIWVKEAKTLPNMDMFHRSLSDMFGRFS--------------PHKI-TSDPYVTI 80
Query: 72 CLAGATVARTRVISNTQNPFWNEHFKIPVAHPADHVEFHVKDNDVFGADLIGIASVPVEK 131
++GA + RT VISN++NP W +HF +PVAH A V F VKD+DV G+ +IG +PVE+
Sbjct: 81 SVSGAVIGRTFVISNSENPVWMQHFYVPVAHHAAEVHFVVKDSDVVGSQIIGAVGIPVEQ 140
Query: 132 LISGETISEWLSIIGPYGKPPKPDSAIRIEMNFMQCQENPLYQYGIAASPNNFGIENCYF 191
+ SG + I+ GKP KP + + + + + ++ LYQ+G+ + P G+ YF
Sbjct: 141 IYSGSKVEGTFQILNGSGKPRKPGAVLTLSIQYTPIEKVTLYQFGVGSGPEYTGVPGTYF 200
Query: 192 PVRRGSSVTLYQDAHVPDSFSPEIKLEN 219
P+R GS VTLYQDAHV D P +KL+N
Sbjct: 201 PLRTGSKVTLYQDAHVHDGCLPNLKLDN 228
>GSVIVT01017316001 assembled CDS
Length = 337
Score = 92.8 bits (229), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 26/158 (16%)
Query: 64 TSDPYVTVCLAGATVARTRVISNT-QNPFWNEHFKIPVAHPADHVEFHVKDNDVFGADLI 122
TS Y T+ + A V RTR+I N NP W E F I AH A H+ F VKD++ GA LI
Sbjct: 49 TSKLYATIDIGRARVGRTRMIENEPSNPRWYESFHIYCAHMAGHIIFTVKDDNPIGATLI 108
Query: 123 GIASVPVEKLISGETISEWLSIIGPYGKPPKPDSAIRIEMNFMQCQENPLYQYGIAASPN 182
G ASVP+++++ GE + +W+ I+ KP S I +++ + + + + GI
Sbjct: 109 GRASVPIQEILGGEEVDKWVEIVNEELKPIHGGSKIHVKLQYFEVTADRSWGRGI----- 163
Query: 183 NFGIENCYFPVRRGSSVTLYQDAHVPDSFSPEIKLENG 220
++AHVPD+F P+I L +G
Sbjct: 164 --------------------RNAHVPDNFVPKIPLADG 181
>GSVIVT01015543001 assembled CDS
Length = 604
Score = 83.2 bits (204), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 51/137 (37%), Positives = 71/137 (51%), Gaps = 3/137 (2%)
Query: 61 RIITSDPYVTVCLAGATVARTRVISNTQ-NPFWNEHFKIPVAHPADHVEFHVKDNDVFGA 119
R +S YVT+ L A V RTR + N + NP W+E F I AH A HV F VK + GA
Sbjct: 38 RAGSSKVYVTIDLDKARVGRTRKLENEETNPHWSECFHIYCAHKASHVVFSVKQENPIGA 97
Query: 120 DLIGIASVPVEKLISGETISEWLSIIGPYGKPPKPDSAIRIEMNFMQCQENPLYQYGIAA 179
+IG A +PVE+L+ GE + WL + P S + +++ F + GI
Sbjct: 98 TVIGRAQLPVEELLEGE-VDRWLELFHHDRTPIHGGSKLHVKLQFFDVTRECNWSRGI-T 155
Query: 180 SPNNFGIENCYFPVRRG 196
SP G+ +FP R+G
Sbjct: 156 SPKFPGVPYTFFPQRKG 172
>GSVIVT01027587001 assembled CDS
Length = 940
Score = 80.9 bits (198), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 59/105 (56%), Gaps = 24/105 (22%)
Query: 10 MYIHGDLDLKIIEARRLPNMDLLTERIRRCLLAFDNCRKPCLEETKHEPPHRIITSDPYV 69
+ +HG+LD+ + EA+ LPNMD+ + + ITSDPYV
Sbjct: 211 LLLHGNLDICVNEAKNLPNMDMFHKTLGD------------------------ITSDPYV 246
Query: 70 TVCLAGATVARTRVISNTQNPFWNEHFKIPVAHPADHVEFHVKDN 114
++ ++GA + RT VISN++NP W + F +PVAH A V F VKDN
Sbjct: 247 SISVSGAVIGRTFVISNSENPIWKQKFYVPVAHHAAEVHFMVKDN 291
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 25/39 (64%)
Query: 182 NNFGIENCYFPVRRGSSVTLYQDAHVPDSFSPEIKLENG 220
N G+ YFP+RRG +VTLYQDAHVPD P L G
Sbjct: 291 NYLGVPGTYFPLRRGGTVTLYQDAHVPDGCLPSPMLAQG 329
>GSVIVT01015542001 assembled CDS
Length = 703
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Query: 65 SDPYVTVCLAGATVARTRVISNT-QNPFWNEHFKIPVAHPADHVEFHVKDNDVFGADLIG 123
S YVT+ L A V RT + N NP W + F I AH A HV F VK ++ GA +IG
Sbjct: 47 SKIYVTIDLEKAGVGRTSKLDNEDSNPRWYQSFHIYCAHKASHVVFSVKQDNPIGATVIG 106
Query: 124 IASVPVEKLISGETISEWLSIIGPYGKPPKPDSAIRIEMNFMQCQENPLYQYGIAASPNN 183
A +PV +L+ GE + WL + P S + +++ F+ + GI SP
Sbjct: 107 RAHLPVGELLEGE-VDRWLELFHHDHTPINGGSKLHVKLQFVDVTREFNWSRGI-RSPKF 164
Query: 184 FGIENCYFPVRRG 196
G+ +FP R+G
Sbjct: 165 PGVPYTFFPQRKG 177
>GSVIVT01035853001 assembled CDS
Length = 752
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 3/137 (2%)
Query: 62 IITSDPYVTVCLAGATVARTRVISNT--QNPFWNEHFKIPVAHPADHVEFHVKDNDVFGA 119
+I S Y TV L A VARTR+I N P W E F+I AH ++ F +K+++ GA
Sbjct: 8 VIGSKLYATVDLEKARVARTRLIENRAYSKPRWFESFRIYCAHRISNIIFTIKEDNPVGA 67
Query: 120 DLIGIASVPVEKLISGETISEWLSIIGPYGKPPKPDSAIRIEMNFMQCQENPLYQYGIAA 179
LIG A VPVE + SG + + I+ P S I ++++F ++ + GI
Sbjct: 68 RLIGRAYVPVEAIKSGHEVDLQVEILDEDRNPLPGHSRIHVKLHFFHAKKQSDWSKGI-L 126
Query: 180 SPNNFGIENCYFPVRRG 196
+P + +F R+G
Sbjct: 127 NPELGEVPCTFFMQRQG 143
>GSVIVT01013532001 assembled CDS
Length = 414
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 62 IITSDPYVTVCLAGATVARTRVISNTQNPFWNEHFKIPVAHPADHVEFHVKDNDVFGA-D 120
++TSDPYV + L +V +TRVI N NP WNE + + + V D D F D
Sbjct: 275 VMTSDPYVLLALGQQSV-KTRVIKNNLNPVWNERLMLSIPEQIPPLRVFVYDKDTFSTDD 333
Query: 121 LIGIASVPVEKLISG 135
+G A + ++ L+S
Sbjct: 334 FMGEAEIDIQPLVSA 348
>GSVIVT01021653001 assembled CDS
Length = 330
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 62 IITSDPYVTVCLAGATVARTRVISNTQNPFWNEHFKIPVAHPADHVEFHVKDNDVFGA-D 120
+++SDPYV + L TV +T+VI++ NP WNE + V ++ V D+D F A D
Sbjct: 191 MLSSDPYVVLTLGPQTV-QTQVITSNLNPVWNEELMLSVPMDYGPIKVKVFDHDTFSADD 249
Query: 121 LIGIASVPVEKLIS 134
++G A + ++ LI+
Sbjct: 250 IMGEAEIDIQPLIT 263
>GSVIVT01007329001 assembled CDS
Length = 165
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 64 TSDPYVTVCLAGATVARTRVISNTQNPFWNEHFKIPVAHPADHVEFHVKDNDVFGA-DLI 122
+SDPYV V L T A+T+VI++ NP WNE + P + V D D F A D +
Sbjct: 25 SSDPYVIVKLGNQT-AKTKVINSCLNPVWNEELSFSLMDPVGVLYLEVFDKDRFKADDKM 83
Query: 123 GIASVPVEKLISGETISEWLSI 144
G A + ++ ++S + + L +
Sbjct: 84 GHAHLSLQPIVSAARLRQILGV 105
>GSVIVT01016876001 assembled CDS
Length = 950
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 69/152 (45%), Gaps = 11/152 (7%)
Query: 68 YVTVCLAGATVARTRVISNTQNPFWNEHFKIPVAHPADH-VEFHVKDNDVFGADLIGIAS 126
YVT+ + VA+T S+ + WN+ F+I AH D + +K ++G
Sbjct: 237 YVTIKIDDKKVAKT---SHESDRVWNQTFQILCAHLIDSTITITLKTK----CSILGRIQ 289
Query: 127 VPVEKLI-SGETISEWLSIIGPYGKPPKPDSAIRIEMNFMQCQENPLYQYGIAASPNNFG 185
+ +++ I + ++ G+P P+ +R + F + P + I + + G
Sbjct: 290 IQAHQIVHEASFIDGYFPLLMENGRP-NPELKLRFMLWFRPAEFEPTWG-NILWNGDFQG 347
Query: 186 IENCYFPVRRGSSVTLYQDAHVPDSFSPEIKL 217
++N FP R SV LYQDAH +F P L
Sbjct: 348 VKNATFPQRSDCSVILYQDAHHCSTFQPPYSL 379
>GSVIVT01031025001 assembled CDS
Length = 748
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 4/84 (4%)
Query: 64 TSDPYVTVCLAGATVARTRVISNTQNPFWNEHFKIPVAHPADHVEFHVKDNDVFGADL-I 122
TS+PYV V L G +T+VI T NP+WN+ F+ P + + HVKD++ L I
Sbjct: 562 TSNPYVKV-LYGKLKKKTKVIYKTLNPYWNQAFEFP--DNSSPLVLHVKDHNALLPTLSI 618
Query: 123 GIASVPVEKLISGETISEWLSIIG 146
G V + L+ +T +W+ + G
Sbjct: 619 GNCVVEYQGLMPNQTADKWIPLQG 642
>GSVIVT01016258001 assembled CDS
Length = 544
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 56/126 (44%), Gaps = 13/126 (10%)
Query: 64 TSDPYVTVCLAGATV--ARTRVISNTQNPFWNEHFKIPVAHPADHV-EFHVKDNDVFGA- 119
SDPYV + L+G + +T V NP WNE FK+ V P V + +V D D GA
Sbjct: 281 ASDPYVKLSLSGERLPAKKTTVKRKNLNPEWNEKFKLIVRDPQAQVLQLYVYDWDKVGAH 340
Query: 120 DLIGIASVPVEKLISGETISEWLSIIGPYGKP---PKPDSAIRIEMNF------MQCQEN 170
D +G+ VP++ L ET L + K I +E+ F +C
Sbjct: 341 DKLGMQLVPLKLLTPHETQEFTLDLFKNTNLSDPQQKQRGKIVVELTFDPFKEDHECYSG 400
Query: 171 PLYQYG 176
PL YG
Sbjct: 401 PLDGYG 406