Jatropha Genome Database

JcCB0171281.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0171281.10 + phase: 0 /pseudo/partial
         (110 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008736001 assembled CDS                                       117   8e-28
GSVIVT01023968001 assembled CDS                                       107   1e-24
GSVIVT01011268001 assembled CDS                                        73   2e-14

>GSVIVT01008736001 assembled CDS
          Length = 442

 Score =  117 bits (294), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 57/83 (68%), Positives = 69/83 (83%), Gaps = 1/83 (1%)

Query: 28  SFQGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMIALIQS 87
           S QGK QGCISGI SFA++VSPL F+PLTALFLS+ APF+FPGFSIMC GF SMIA +QS
Sbjct: 361 SEQGKVQGCISGISSFAHLVSPLAFTPLTALFLSDGAPFNFPGFSIMCIGFASMIAFLQS 420

Query: 88  IMMRLPPPLISNERVNNCNYVDA 110
           + +R  PP ISN++V NC+Y +A
Sbjct: 421 LTIRAAPP-ISNKKVGNCSYTEA 442


>GSVIVT01023968001 assembled CDS
          Length = 439

 Score =  107 bits (266), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/75 (69%), Positives = 60/75 (80%)

Query: 30  QGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMIALIQSIM 89
           QGKAQGCISGI S A ++SPL+FSPLTALFLS+ APF+FPGFSIMC GF SMIA IQS M
Sbjct: 362 QGKAQGCISGISSSAQIISPLIFSPLTALFLSQGAPFYFPGFSIMCIGFASMIAFIQSTM 421

Query: 90  MRLPPPLISNERVNN 104
           +R  PP+ S    N+
Sbjct: 422 IRAVPPISSQPTSNS 436


>GSVIVT01011268001 assembled CDS
          Length = 435

 Score = 73.2 bits (178), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 51/75 (68%), Gaps = 2/75 (2%)

Query: 30  QGKAQGCISGIGSFANVVSPLLFSPLTALFLSERAPFHFPGFSIMCAGFTSMIALIQSIM 89
           QGKAQG I+GI S A+++SPL  SPLT+ FLS  APF   GFSI+CA    MIAL  ++ 
Sbjct: 352 QGKAQGFIAGIQSVASLLSPLAMSPLTSWFLSSNAPFKCKGFSIVCASLCMMIALCYAVF 411

Query: 90  MRLPPPLISNERVNN 104
           ++   P  +N+ +NN
Sbjct: 412 LKQDEP--ANDELNN 424