Jatropha Genome Database

JcCB0170441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0170441.10 + phase: 0 /partial
         (284 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01019610001 assembled CDS                                       321   3e-88

>GSVIVT01019610001 assembled CDS
          Length = 544

 Score =  321 bits (822), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 162/284 (57%), Positives = 193/284 (67%), Gaps = 24/284 (8%)

Query: 1   MTTLESLSPCNNIGPVIPTTPLITFLERVQETALDTFGKKGFDPKLYVDLSLKFNLSTTE 60
           M   E+ S C+   PV PTTPL+TFL+R+QETA  T+G   FDPKLYVDLSLKFNLS TE
Sbjct: 1   MAVTEASSQCS---PVKPTTPLVTFLDRLQETAFKTYGNSDFDPKLYVDLSLKFNLSDTE 57

Query: 61  KAFDGLPRNENGNVLVKDLEEFIATYFEDEGDDLVYYDPPDFVPEPDGFLPEVENLEVRE 120
           +AF  LPR+ENG+V V+ LE F+  Y    G+DLV   P D+VPEP GFLP+VE      
Sbjct: 58  EAFKKLPRSENGSVSVEILEGFMGEYMRGAGEDLVEVVPEDYVPEPTGFLPKVE------ 111

Query: 121 WALKVHSLWKNLSRKISGEVLKQXXXXXXXXXXXXMIVPGSRFREVYYWDSYWVIRGLLA 180
                          IS  V  +            +++PGSRFREVYYWDSYWVIRGLLA
Sbjct: 112 ---------------ISNGVRDRPDLHTLLPLPNPVVIPGSRFREVYYWDSYWVIRGLLA 156

Query: 181 SKMYETAKSIVTNLISLVNKYGFALNGGRAYYTNRSEPPLLSAMVYEIYNRTGDMEXXXX 240
           SKM+ETAK+IV NLISL+++YG+ LNG RAYY+NRS+PPLLS+M+YEIY RTGD E    
Sbjct: 157 SKMHETAKAIVANLISLIDEYGYVLNGARAYYSNRSQPPLLSSMIYEIYKRTGDKEMVRK 216

Query: 241 XXXXXXXEHEFWNSEMHKVTIQDAQGSNHILSRYYAKWNKPRPE 284
                  EH+FWNS  HK+TIQD Q  NH LSRYYA W+KPRPE
Sbjct: 217 SLPALLKEHQFWNSGKHKMTIQDDQACNHTLSRYYAMWDKPRPE 260