Jatropha Genome Database

JcCB0164571.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0164571.10 - phase: 0 /partial
         (341 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022468001 assembled CDS                                       498   e-141
GSVIVT01034588001 assembled CDS                                       127   9e-30
GSVIVT01025272001 assembled CDS                                       127   1e-29
GSVIVT01024971001 assembled CDS                                        64   1e-10
GSVIVT01017775001 assembled CDS                                        57   2e-08
GSVIVT01025275001 assembled CDS                                        50   1e-06

>GSVIVT01022468001 assembled CDS
          Length = 456

 Score =  498 bits (1282), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 234/310 (75%), Positives = 273/310 (88%)

Query: 31  FTFQQLAVPLREYLDNFPKRKYLHPYERSLIELTLGEGNYEEVLRNVDALRKKVVSVGKE 90
           F  ++LAVPLR Y +NFP +K LHPYE+SLI+LTLG+GNYE+VLR VD+LRKKVVSVGKE
Sbjct: 131 FLMKELAVPLRGYAENFPDKKQLHPYEQSLIQLTLGDGNYEQVLRRVDSLRKKVVSVGKE 190

Query: 91  HASVCAKSSTKREAEERLNEGLEKLQEIFKREGKAVDELLNIAKTLRAMPVVDLETPTLC 150
           HAS+CAKS TKREAEERL EG++KL++IF  EGKAVD+LLNIAKTLRAMPVVDLETPTLC
Sbjct: 191 HASLCAKSLTKREAEERLGEGMKKLEDIFNHEGKAVDDLLNIAKTLRAMPVVDLETPTLC 250

Query: 151 LVGAPNVGKSSLVRILSTGKPEVCNYPFTTRGILMGHISFDFKYFQVTDTPGLLKRCDEE 210
           LVGAPNVGKSSLVR+LSTGKPEVCNYPFTTRGILMGHI+F++++FQVTDTPGLL R D+E
Sbjct: 251 LVGAPNVGKSSLVRVLSTGKPEVCNYPFTTRGILMGHIAFNYRHFQVTDTPGLLNRHDDE 310

Query: 211 RNNLEKLTLAVLRHLPTAILYVHDLTGECGTPVSDQFEIYKEIKERFSNHLWLDVVSKCD 270
           RNNLEKLTLAVL HLPTAILYVHDL+GECGT  SDQF IYKEI+ERFS+HLW+DVVSKCD
Sbjct: 311 RNNLEKLTLAVLSHLPTAILYVHDLSGECGTSPSDQFFIYKEIRERFSDHLWIDVVSKCD 370

Query: 271 LLQELPVIFIAEDSNGGHFEMARYSKIGPSGAIHVSAKSREGLDELKAKVHDLLVAQMER 330
           LLQE P+IF  ED +  + E+ARY K+GP GAIHVS K+   L++LK +VH+LLV+QM R
Sbjct: 371 LLQESPIIFNTEDVSADNPELARYQKMGPEGAIHVSVKNEAALNQLKGRVHELLVSQMSR 430

Query: 331 IRGMQMKEAN 340
           I+  +  E N
Sbjct: 431 IKSSESNEEN 440


>GSVIVT01034588001 assembled CDS
          Length = 407

 Score =  127 bits (319), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 122/241 (50%)

Query: 31  FTFQQLAVPLREYLDNFPKRKYLHPYERSLIELTLGEGNYEEVLRNVDALRKKVVSVGKE 90
           +T Q     L   ++ FP+   +HP+   L+ +   + +Y+  L  ++  R  +  + K+
Sbjct: 6   YTQQNFHEKLSTIIEEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKD 65

Query: 91  HASVCAKSSTKREAEERLNEGLEKLQEIFKREGKAVDELLNIAKTLRAMPVVDLETPTLC 150
           +  +     +    +      L ++  + KR   ++  L  + + L  +P VD  T T+ 
Sbjct: 66  YVKLLKYGDSLYRCKSLKVAALGRMCTVIKRIAPSLAYLEQVRQHLARLPSVDPNTRTIL 125

Query: 151 LVGAPNVGKSSLVRILSTGKPEVCNYPFTTRGILMGHISFDFKYFQVTDTPGLLKRCDEE 210
           + G PNVGKSS +  ++    +V  Y FTT+ + +GH  + +  +QV DTPG+L R  E+
Sbjct: 126 ICGYPNVGKSSFINKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED 185

Query: 211 RNNLEKLTLAVLRHLPTAILYVHDLTGECGTPVSDQFEIYKEIKERFSNHLWLDVVSKCD 270
           RN +E  ++  L HL  A+L+  D++G CG  ++ Q  ++  IK  F N   + V +K D
Sbjct: 186 RNIIEMCSITALAHLRAAVLFFLDISGSCGYSIAAQAALFHSIKSLFMNKPLIIVCNKTD 245

Query: 271 L 271
           L
Sbjct: 246 L 246


>GSVIVT01025272001 assembled CDS
          Length = 354

 Score =  127 bits (318), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 122/241 (50%)

Query: 31  FTFQQLAVPLREYLDNFPKRKYLHPYERSLIELTLGEGNYEEVLRNVDALRKKVVSVGKE 90
           +T Q     L   ++ FP+   +HP+   L+ +   + +Y+  L  ++  R  +  + K+
Sbjct: 6   YTQQNFHEKLSTIIEEFPRLDDIHPFYGDLLHVLYNKDHYKLALGQINTARNLISKIAKD 65

Query: 91  HASVCAKSSTKREAEERLNEGLEKLQEIFKREGKAVDELLNIAKTLRAMPVVDLETPTLC 150
           +  +     +    +      L ++  + KR   ++  L  I + +  +P +D  T T+ 
Sbjct: 66  YVRLLKYGDSLYRCKSLKVAALGRMCTVIKRIAPSLAYLEQIRQHMARLPSIDPNTRTIL 125

Query: 151 LVGAPNVGKSSLVRILSTGKPEVCNYPFTTRGILMGHISFDFKYFQVTDTPGLLKRCDEE 210
           + G PNVGKSS +  ++    +V  Y FTT+ + +GH  + +  +QV DTPG+L R  E+
Sbjct: 126 ICGYPNVGKSSFINKITRADVDVQPYAFTTKSLFVGHTDYKYLRYQVIDTPGILDRPFED 185

Query: 211 RNNLEKLTLAVLRHLPTAILYVHDLTGECGTPVSDQFEIYKEIKERFSNHLWLDVVSKCD 270
           RN +E  ++  L HL  A+L+  D++G CG  ++ Q  ++  IK  F N   + V +K D
Sbjct: 186 RNIIEMCSITALAHLRAAVLFFLDISGSCGYSIAAQAALFHSIKSLFMNKPLIIVCNKTD 245

Query: 271 L 271
           L
Sbjct: 246 L 246


>GSVIVT01024971001 assembled CDS
          Length = 501

 Score = 63.9 bits (154), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/206 (32%), Positives = 102/206 (49%), Gaps = 28/206 (13%)

Query: 86  SVGKEHASVCAKSSTKREAEERLNEGLEKLQEIFKR-------EGKAVDELLNI---AKT 135
           SVGK  A+   + S+  E +E++   + +L E  +R       EG + D+  ++   +  
Sbjct: 209 SVGKRQAT---QVSSSVEQKEQIQYNVAELTEEGQRIIVACGGEGVSDDDQSSLGIGSPG 265

Query: 136 LRAMPVVDLET-PTLCLVGAPNVGKSSLVRILSTGKPEVCNYPFTTRGILMGHISFDFKY 194
             A+ V++L++   + LVG PN GKS+L+  +S  KP V +Y FTT    +G++ +D   
Sbjct: 266 SEAILVLELKSIADVGLVGFPNAGKSTLLGAMSRAKPTVGHYAFTTLRPNIGNLKYDDLS 325

Query: 195 FQVTDTPGLLKRCDEERNNLEKLTLAVLRHL--PTAILYVHDLT----GECGTPVSDQF- 247
             V D PGL+K   E R     L  A LRH+     I YV DL     G  G P  +Q  
Sbjct: 326 ITVADIPGLIKGAHENRG----LGHAFLRHIERTKVIAYVVDLAAALDGRKGIPPWEQLK 381

Query: 248 EIYKEI---KERFSNHLWLDVVSKCD 270
           ++  E+   +E  SN   L V +K D
Sbjct: 382 DLILELEYYREGLSNRPSLVVANKID 407


>GSVIVT01017775001 assembled CDS
          Length = 397

 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 47/93 (50%), Gaps = 5/93 (5%)

Query: 151 LVGAPNVGKSSLVRILSTGKPEVCNYPFTTRGILMGHISFDF-KYFQVTDTPGLLKRCDE 209
           +VGAPN GKS+L+ ++S  +P + NYPFTT    +G +SF +     V D PGLL+   +
Sbjct: 102 IVGAPNAGKSTLLSVISAAQPTIANYPFTTLLPNLGVVSFGYDATMVVADLPGLLEGAHK 161

Query: 210 ERNNLEKLTLAVLRHLPTAILYVHDLTGECGTP 242
                  L    LRH       VH + G    P
Sbjct: 162 GFG----LGHEFLRHTERCSSLVHVVDGSSQQP 190


>GSVIVT01025275001 assembled CDS
          Length = 658

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 64/125 (51%), Gaps = 8/125 (6%)

Query: 147 PTLCLVGAPNVGKSSLV-RILSTGKPEVCNYPFTTRGILMGHISFDFKYFQVTDTPGLLK 205
           P + +VG PNVGKS+L  R++   K  V + P  TR  L G   +    F V DT G+L 
Sbjct: 188 PRVTIVGRPNVGKSALFNRLVGGNKAIVVDEPGVTRDRLYGRAFWGDYEFMVIDTGGVLT 247

Query: 206 RCDEERNNLEKLTLAVLRHLPTAILYVHDLTGECGTPVSDQFEIYKEIKERFSNHLWLDV 265
               + N  ++ T A+     + I+++ D  G+ G   +D  EI   +++ +SN   +  
Sbjct: 248 ISKSQDN--KQATAAI--EESSVIIFLVD--GQAGLSAAD-VEIADWLRKNYSNKCIVLA 300

Query: 266 VSKCD 270
           V+KC+
Sbjct: 301 VNKCE 305