Jatropha Genome Database

JcCB0164521.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0164521.10 - phase: 0 /partial
         (141 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01026903001 assembled CDS                                        52   7e-08
GSVIVT01026910001 assembled CDS                                        52   7e-08
GSVIVT01030098001 assembled CDS                                        50   2e-07
GSVIVT01000882001 assembled CDS                                        49   6e-07
GSVIVT01013508001 assembled CDS                                        49   8e-07
GSVIVT01026747001 assembled CDS                                        49   9e-07
GSVIVT01026750001 assembled CDS                                        49   1e-06
GSVIVT01012168001 assembled CDS                                        48   2e-06
GSVIVT01034675001 assembled CDS                                        48   2e-06
GSVIVT01013512001 assembled CDS                                        48   2e-06
GSVIVT01026728001 assembled CDS                                        47   3e-06
GSVIVT01000646001 assembled CDS                                        47   4e-06
GSVIVT01012165001 assembled CDS                                        47   4e-06
GSVIVT01022856001 assembled CDS                                        47   4e-06
GSVIVT01012169001 assembled CDS                                        46   5e-06
GSVIVT01000879001 assembled CDS                                        45   8e-06

>GSVIVT01026903001 assembled CDS
          Length = 1136

 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 56  CLTTFRSNYEKLPDFLKCCIDYCCICVR-YHIEKGKLVRLLLAEGLITEKPGEVMEDIAS 114
           C+     +Y  LP +LK C  YC I      I+  KL+RL LAEG I  +  E +EDIA 
Sbjct: 406 CMGILALSYNDLPYYLKSCFLYCGIFPEDSEIKASKLIRLWLAEGFIQRRGKETLEDIAE 465

Query: 115 NVIAELIDLGMLR 127
           + + ELI   +++
Sbjct: 466 DYMHELIHRSLIQ 478


>GSVIVT01026910001 assembled CDS
          Length = 920

 Score = 52.4 bits (124), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 56  CLTTFRSNYEKLPDFLKCCIDYCCICVR-YHIEKGKLVRLLLAEGLITEKPGEVMEDIAS 114
           C+     +Y  LP +LK C  YC I      I+  KL+RL LAEG I  +  E +EDIA 
Sbjct: 406 CMGILALSYNDLPYYLKSCFLYCGIFPEDSEIKASKLIRLWLAEGFIQRRGKETLEDIAE 465

Query: 115 NVIAELIDLGMLR 127
           + + ELI   +++
Sbjct: 466 DYMHELIHRSLIQ 478


>GSVIVT01030098001 assembled CDS
          Length = 591

 Score = 50.4 bits (119), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 74  CIDYCCICVR-YHIEKGKLVRLLLAEGLITEKPGEVMEDIASNVIAELIDLGMLR 127
           C  YCCI    Y I++ KL+RL +AEG ITE+ G  ME+IA   + ELI   M++
Sbjct: 246 CFLYCCIFPDGYPIKRKKLIRLWVAEGFITERKGMTMEEIAEEYLTELIFRSMVQ 300


>GSVIVT01000882001 assembled CDS
          Length = 759

 Score = 49.3 bits (116), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 57  LTTFRSNYEKLPDFLKCCIDYCCICVRYHIE-KGKLVRLLLAEGLI-TEKPGEVMEDIAS 114
           L   R +YE+LP +LKCC  YC I  + H+    +LV +  A+GLI T K  + ++DI +
Sbjct: 327 LPALRLSYEQLPSYLKCCFAYCSIFPKDHVFCNEELVDMWSAQGLIETSKKKQELDDIGN 386

Query: 115 NVIAELIDLGMLRQVLD 131
             I EL+     +   D
Sbjct: 387 RYIKELLSRSFFQDFED 403


>GSVIVT01013508001 assembled CDS
          Length = 804

 Score = 48.9 bits (115), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 3/75 (4%)

Query: 57  LTTFRSNYEKLPDFLKCCIDYCCICVR-YHIEKGKLVRLLLAEGLITEKPGE--VMEDIA 113
           L   R +Y  LP  LK C  YC +  + Y  EK +LV L +AEG I +  G+   MED+ 
Sbjct: 345 LRVLRLSYHHLPSHLKRCFSYCALFPKDYEFEKKELVLLWMAEGFIHQSKGDELQMEDLG 404

Query: 114 SNVIAELIDLGMLRQ 128
           +N   E++     +Q
Sbjct: 405 ANYFDEMLSRSFFQQ 419


>GSVIVT01026747001 assembled CDS
          Length = 597

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 56  CLTTFRSNYEKLPDFLKCCIDYCCICVR-YHIEKGKLVRLLLAEGLITEKPGEVMEDIAS 114
           CL     +Y  +P +LK C  YC +      I   KL+RL +AEG I  +  E+ ED+A 
Sbjct: 395 CLGVLALSYNDMPYYLKSCFLYCGLFPEDSEIRTDKLIRLWVAEGFIQRRGEEIGEDVAE 454

Query: 115 NVIAELIDLGMLRQVLDGF 133
           + + EL+   M++     F
Sbjct: 455 DHLQELVHRSMIQVAARSF 473


>GSVIVT01026750001 assembled CDS
          Length = 807

 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 56  CLTTFRSNYEKLPDFLKCCIDYCCICVR-YHIEKGKLVRLLLAEGLITEKPGEVMEDIAS 114
           CL     +Y  +P +LK C  YC +      I   KL+RL +AEG I  +  E+ EDIA 
Sbjct: 281 CLGVLALSYNDMPYYLKSCFLYCGLFPEDSEIWTEKLIRLWVAEGFIQRRGEEIAEDIAE 340

Query: 115 NVIAELIDLGMLRQVLD 131
           + + EL+   M+ QV D
Sbjct: 341 DHLQELVHRSMI-QVAD 356


>GSVIVT01012168001 assembled CDS
          Length = 1463

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 57  LTTFRSNYEKLPDFLKCCIDYCCICVRYH-IEKGKLVRLLLAEGLITEKPGEVMEDIASN 115
           ++   ++YE LP  LK C  Y  +      +++ +L+RL +AEG + E+ G+ +E++   
Sbjct: 428 MSALSASYEDLPYHLKYCFLYLSMFPENKPVKRRRLIRLWIAEGFVREERGKTLEEVGEE 487

Query: 116 VIAELIDLGMLR 127
            + ELID  ML+
Sbjct: 488 YLNELIDRNMLK 499



 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 57   LTTFRSNYEKLPDFLKCCIDYCCICVRYH-IEKGKLVRLLLAEGLITEKPGEVMEDIASN 115
            +    ++Y+ LP  LKCC  Y  I      +++ +LVRL +AE  +TE+ G+ +E++   
Sbjct: 1174 MKVLSTSYKDLPYHLKCCFLYMGIFPENKPVKRRRLVRLWIAERFVTEERGKTLEEVGEE 1233

Query: 116  VIAELIDLGMLR 127
             + ELID  +++
Sbjct: 1234 YLNELIDRSLIQ 1245


>GSVIVT01034675001 assembled CDS
          Length = 908

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 3/68 (4%)

Query: 57  LTTFRSNYEKLPDFLKCCIDYCCICVR-YHIEKGKLVRLLLAEGLITEKP--GEVMEDIA 113
           L   R +Y  LP  LK C  YC I  + Y  +K +LV L +AEGLI + P   + MED+ 
Sbjct: 91  LPALRLSYHYLPSHLKRCFAYCSIFPKDYEFDKKELVLLWMAEGLIQQSPKGKKQMEDMG 150

Query: 114 SNVIAELI 121
           S+   EL+
Sbjct: 151 SDYFCELL 158


>GSVIVT01013512001 assembled CDS
          Length = 944

 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 37/68 (54%), Gaps = 3/68 (4%)

Query: 57  LTTFRSNYEKLPDFLKCCIDYCCICVR-YHIEKGKLVRLLLAEGLITEKPG--EVMEDIA 113
           L   R +Y  LP  LK C  YC +  + Y  EK +L+ L +AEGLI +  G    MED+ 
Sbjct: 425 LQVLRLSYHHLPSHLKRCFGYCAMFPKDYEFEKKELILLWIAEGLIHQSEGGRHQMEDLG 484

Query: 114 SNVIAELI 121
           +N   EL+
Sbjct: 485 ANYFDELL 492


>GSVIVT01026728001 assembled CDS
          Length = 758

 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 56  CLTTFRSNYEKLPDFLKCCIDYCCICVR-YHIEKGKLVRLLLAEGLITEKPGEVMEDIAS 114
           CL     +Y  +P +LK C  YC +      I   KL+RL +AEG I  +  E+ ED+A 
Sbjct: 321 CLGVLALSYNDMPYYLKSCFLYCGLFPEDSEIWTDKLIRLWVAEGFIQRRGVEIAEDVAE 380

Query: 115 NVIAELIDLGMLRQVLDGF 133
           + + EL+   M++     F
Sbjct: 381 DHLQELVHRSMIQVAARSF 399


>GSVIVT01000646001 assembled CDS
          Length = 1760

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 57  LTTFRSNYEKLPDFLKCCIDYCCICVR-YHIEKGKLVRLLLAEGLITEKPGE-VMEDIAS 114
           L   + +Y  LP  LK C  YC +  + Y  +KG+L+ L +AEGL+    G+  MEDI S
Sbjct: 332 LPALKLSYHHLPSHLKRCFAYCSMFPKSYEFQKGELILLWMAEGLLQHVKGKRQMEDIGS 391

Query: 115 NVIAELI 121
              +EL+
Sbjct: 392 EYFSELL 398


>GSVIVT01012165001 assembled CDS
          Length = 645

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 43/72 (59%), Gaps = 1/72 (1%)

Query: 57  LTTFRSNYEKLPDFLKCCIDYCCICVRYH-IEKGKLVRLLLAEGLITEKPGEVMEDIASN 115
           +  F ++Y+ LP  LK C  Y  I    + +++ +L+RL +AEG +TE+ G+ +E++   
Sbjct: 358 MRVFSASYKDLPYHLKYCFLYMSIFPENNPVKRRRLIRLWIAEGFVTEERGKTLEEVGEE 417

Query: 116 VIAELIDLGMLR 127
            + ELI   +++
Sbjct: 418 YLNELIGRSLIK 429


>GSVIVT01022856001 assembled CDS
          Length = 629

 Score = 46.6 bits (109), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 2/67 (2%)

Query: 57  LTTFRSNYEKLPDFLKCCIDYCCICVR-YHIEKGKLVRLLLAEGLITEKPGE-VMEDIAS 114
           L   R +Y  LP  LK C  YC I  + Y +EK KL+ L +AEGL+ E  G+  ME++  
Sbjct: 203 LPALRLSYNYLPSHLKQCFAYCSIFPKDYELEKEKLILLWMAEGLLQESKGKRRMEEVGD 262

Query: 115 NVIAELI 121
               EL+
Sbjct: 263 LYFHELL 269


>GSVIVT01012169001 assembled CDS
          Length = 7824

 Score = 46.2 bits (108), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 57   LTTFRSNYEKLPDFLKCCIDYCCICVRYH-IEKGKLVRLLLAEGLITEKPGEVMEDIASN 115
            +    ++Y  LP  LK C  Y  I    + +++ +L+RL +AEG + EK G+ +E++   
Sbjct: 1340 MKVLSASYNDLPYHLKYCFLYMSIFPESNPVKRRRLIRLWIAEGFVIEKRGKTLEEVGEE 1399

Query: 116  VIAELIDLGMLR 127
             + ELID  +++
Sbjct: 1400 YLNELIDRNLIK 1411



 Score = 46.2 bits (108), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)

Query: 57  LTTFRSNYEKLPDFLKCCIDYCCICVRYH-IEKGKLVRLLLAEGLITEKPGEVMEDIASN 115
           +    ++Y  LP  LK C  Y  I    + +++ +L+RL +AEG + EK G+ +E++   
Sbjct: 390 MKVLSASYNDLPYHLKYCFLYMSIFPENNLVKRRRLIRLWIAEGFVIEKRGKTLEEVGEE 449

Query: 116 VIAELIDLGMLR 127
            + ELID  +++
Sbjct: 450 YLNELIDRSLIK 461


>GSVIVT01000879001 assembled CDS
          Length = 795

 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 2/77 (2%)

Query: 57  LTTFRSNYEKLPDFLKCCIDYCCICVR-YHIEKGKLVRLLLAEGLIT-EKPGEVMEDIAS 114
           L   R +YE+LP +LKCC  YC I  + Y ++   LV +  A+GLI   K  + ++DI +
Sbjct: 398 LPALRLSYEQLPSYLKCCFAYCSIFPKDYVLDNESLVCIWSAKGLIEPSKKKQELDDIGN 457

Query: 115 NVIAELIDLGMLRQVLD 131
             I E++     +   D
Sbjct: 458 RYIKEMLSRSFFQDFED 474