Jatropha Genome Database

JcCB0163231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0163231.10 - phase: 0 /partial
         (304 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01000839001 assembled CDS                                       275   2e-74
GSVIVT01000664001 assembled CDS                                       132   2e-31

>GSVIVT01000839001 assembled CDS
          Length = 454

 Score =  275 bits (702), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 163/299 (54%), Positives = 206/299 (68%), Gaps = 26/299 (8%)

Query: 18  KPALFPSKT-------SPFKISFSLNPSNTEPTPQNPPE-----FEPEPGPAHPVKLAFE 65
           KP+LF S T        P K+SFS + SN E +P N P       E +PG + P KL+F 
Sbjct: 21  KPSLFTSTTPILNPQIRPLKVSFSQSQSNAESSPSNSPNSGEGPLEVKPGSSDPDKLSFA 80

Query: 66  KAKAYKKSTGDSKKTKLGQNLXXXXXXXXXXXXXXDEEVPASVKVAMENAKEYKKNKGVA 125
           +AK YKK+T    K ++  N                +E+P SVK+A+E AKEY KNKGV 
Sbjct: 81  RAKEYKKTT----KQEMDGN-PGLGSEGNGNGGGEAQEMPVSVKIALEKAKEYTKNKGVV 135

Query: 126 GGGDVKGSARSETNSGLKGGNRENLVSGLVESSASNKEKLSISSMDFMGLNFADKKRGKG 185
           G       +RSE    L GGN  NL +G+VE     KE+L+ISS+DF+GLNF+DKK G+G
Sbjct: 136 G------DSRSE---ALSGGNAGNLGNGIVEKGDDKKEQLAISSIDFVGLNFSDKKTGRG 186

Query: 186 LPPGLTPVTDSFPGGDLPEVEIIVGDTSKFGDPTTSMPKPSQENDSEFYKPKVSTWGVFP 245
           LP GL PV+D FP GDLP VE+IVGDTSKF D T+S PKP+Q+++S+ YKPKVSTWGVFP
Sbjct: 187 LPAGLVPVSDPFPEGDLPGVELIVGDTSKFEDATSSNPKPTQDDNSDLYKPKVSTWGVFP 246

Query: 246 RPGNISKTFGGGRTIRPGDVLETAEERTAKDERTKQLLAAYRKKVGLNVDPKLKLECEK 304
           RP NISKTFGGGR IRPG+VLETA+++ AK+ RT+QLLAAY+ K+GLN+DPKLK EC++
Sbjct: 247 RPNNISKTFGGGRVIRPGEVLETADDKAAKEARTRQLLAAYKTKIGLNIDPKLKSECDQ 305


>GSVIVT01000664001 assembled CDS
          Length = 205

 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/122 (57%), Positives = 86/122 (70%), Gaps = 3/122 (2%)

Query: 185 GLPPGLTPVTDSFPGGDLPEVEIIVGDTSKFGDPTTSMPKPSQENDSEFYKPKVSTWGVF 244
           GL  GL PV+D FP GDLPEVE+IV DTSKF D T+S PKP+Q+++S+ YK KVSTWGVF
Sbjct: 17  GLLAGLVPVSDPFPEGDLPEVELIVEDTSKFEDTTSSNPKPTQDDNSDLYKLKVSTWGVF 76

Query: 245 PRPGNISKTFGGGRTIRPGDVLETAEERTAKDERTKQ--LLAAYRKKVGLNVDPKLKLEC 302
           PRP NISKT         G  +  A ER  K++  K   LLA Y+ K+GLN+DPKLK EC
Sbjct: 77  PRPSNISKTQAQVSANTLGKKI-GARERKEKNKVKKHLKLLATYKTKIGLNIDPKLKSEC 135

Query: 303 EK 304
           ++
Sbjct: 136 DQ 137