Jatropha Genome Database

JcCB0162471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0162471.10 + phase: 1 /pseudo/partial
         (125 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007227001 assembled CDS                                        80   2e-16
GSVIVT01006894001 assembled CDS                                        53   4e-08

>GSVIVT01007227001 assembled CDS
          Length = 306

 Score = 80.1 bits (196), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 34  MTGYLIVFNRERNVLGWKPSNCYDALNTNTFPINPL-SPAVPPATAVNPEXXXXXXXXXX 92
           MTGY I+F+RE+ VLGW  SNCYD   +NT PINP  SP VPP  +V PE          
Sbjct: 213 MTGYRIIFDREKMVLGWTKSNCYDTEESNTLPINPANSPVVPPTVSVEPEATAGNGNGSH 272

Query: 93  XXXXXXPPANHSPRLKRFTFTIIMVLIP 120
                 P AN SP    F   ++MV +P
Sbjct: 273 ISEAPSPLANGSPTWNSFILALLMVFLP 300


>GSVIVT01006894001 assembled CDS
          Length = 518

 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/67 (43%), Positives = 40/67 (59%), Gaps = 3/67 (4%)

Query: 16  LTYIVXVLSKVEMXISSD--MTGYLIVFNRERNVLGWKPSNCYDALNTNTFPINPLSPAV 73
           L Y + V+   E+ I     MTGY I+F+RE+ VLGWK   C D +  ++ PI P + +V
Sbjct: 406 LIYCMAVVRSAELNIIGQNFMTGYRIIFDREKLVLGWKEFEC-DDIENSSVPIRPRATSV 464

Query: 74  PPATAVN 80
           PPA AV 
Sbjct: 465 PPAVAVG 471