Jatropha Genome Database

JcCB0159721.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0159721.10 + phase: 0 
         (242 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022527001 assembled CDS                                       150   5e-37
GSVIVT01023233001 assembled CDS                                        59   2e-09

>GSVIVT01022527001 assembled CDS
          Length = 463

 Score =  150 bits (379), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 66/76 (86%), Positives = 71/76 (93%)

Query: 135 MFGFSDKGNLNLITQALAAVGCKMEVIPDPTTVHFHLPNNLSVRVHREYSDFISELTTKF 194
           MFGFSDKGNLNLITQAL AVGCKM+VIPDPTTVHFHLP+NLSVRVHR+Y +FI+ELT  F
Sbjct: 1   MFGFSDKGNLNLITQALEAVGCKMQVIPDPTTVHFHLPSNLSVRVHRQYGEFIAELTKNF 60

Query: 195 PHEKEGILKFYGECWK 210
           PHEKEGILKFY ECWK
Sbjct: 61  PHEKEGILKFYNECWK 76


>GSVIVT01023233001 assembled CDS
          Length = 570

 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 44/76 (57%), Gaps = 1/76 (1%)

Query: 81  DAIVIGSGIGGLVAATQLAVKGARVLVLEKYTIPGGSSGYYQRDGYTFDVGSSVMFGFSD 140
           D +VIGSGIGGL  A  LA     VLVLE +  PGG++  ++   Y FD G S+  GF  
Sbjct: 50  DVVVIGSGIGGLCCAGLLARYQQDVLVLESHDRPGGAAHSFKIRDYEFDSGPSLFSGFQS 109

Query: 141 KG-NLNLITQALAAVG 155
           +G   N + Q L A+G
Sbjct: 110 RGPQANPLAQVLDALG 125