Jatropha Genome Database

JcCB0159671.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0159671.10 + phase: 0 /pseudo/partial
         (226 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01021843001 assembled CDS                                       323   3e-89
GSVIVT01016650001 assembled CDS                                        88   3e-18

>GSVIVT01021843001 assembled CDS
          Length = 552

 Score =  323 bits (828), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 155/188 (82%), Positives = 165/188 (87%)

Query: 1   ATNXXXXXXXXXXXXXXXPGIKRLLPSQWRESQFFNNIYELVGVPVVTVQLRYNGWVTEL 60
           ATN               PGIKRL+P+QWR+ +FF+NIY+LVGVPVVTVQLRYNGWVTEL
Sbjct: 309 ATNKKIVRADAYVAACDVPGIKRLVPAQWRDWEFFDNIYKLVGVPVVTVQLRYNGWVTEL 368

Query: 61  QDLERSRQLRQALGLDNLLYTPDADFSCFADLALTSPEDYYIEGQGSLLQCVLTPGDPYM 120
           QDLERSRQLR+A GLDNLLYTPDADFSCFADLAL+SPEDYYIEGQGSLLQCVLTPGDPYM
Sbjct: 369 QDLERSRQLRKAAGLDNLLYTPDADFSCFADLALSSPEDYYIEGQGSLLQCVLTPGDPYM 428

Query: 121 PLSNDEIINRVSKQVLALFPSSQGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNF 180
           PL N EIINRV+KQVL LFPSSQGLEV WSSVVKIGQSLYREGPGKDPFRPDQKTPVKNF
Sbjct: 429 PLPNAEIINRVAKQVLVLFPSSQGLEVTWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNF 488

Query: 181 FLSGSVHK 188
           FL+GS  K
Sbjct: 489 FLAGSYTK 496


>GSVIVT01016650001 assembled CDS
          Length = 582

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 98/187 (52%), Gaps = 21/187 (11%)

Query: 21  IKRLLPSQWRESQFFNNIYELVGVPVVTVQLRYNGWVTELQDLERSRQLRQALGLDNLLY 80
           +K LLP  W+E  +F  + +LVGVPV+ V + ++            R+L+     D+LL+
Sbjct: 383 LKLLLPGDWKEIPYFRRLDKLVGVPVINVHIWFD------------RKLKNTY--DHLLF 428

Query: 81  TPDADFSCFADLALTSPEDYYIEGQGSLLQCVLTPGDPYMPLSNDEIINRVSKQVLALFP 140
           +     S +AD+++T  E YY   Q S+L+ V  P + ++  S+ EII    K++  LFP
Sbjct: 429 SRSPLLSVYADMSVTCKE-YYNPNQ-SMLELVFAPAEEWVSRSDSEIIEATMKELAKLFP 486

Query: 141 SS-----QGLEVIWSSVVKIGQSLYREGPGKDPFRPDQKTPVKNFFLSGSVHKFLHLPDI 195
                     +V+   VVK  +S+Y+  P  +P RP Q++P++ F+L+G   K  +L  +
Sbjct: 487 DEISEDQSKAKVLKYHVVKTPRSVYKTVPNCEPCRPLQRSPIEGFYLAGDYTKQKYLASM 546

Query: 196 PRPAVRG 202
               + G
Sbjct: 547 EGAVLSG 553