Jatropha Genome Database

JcCB0158591.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0158591.10 + phase: 2 /partial
         (82 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012247001 assembled CDS                                        84   2e-17

>GSVIVT01012247001 assembled CDS
          Length = 498

 Score = 83.6 bits (205), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 58/79 (73%), Gaps = 2/79 (2%)

Query: 3   EGSHLGSILIPDGSDAINFDV-TDGIYQGSDFMNAKGSLSCEDGTTVDLLQLSSQLQRVE 61
           E + +G +++PDG +A++F+V T+  +QGSDF+NAK S S E   TVDLLQLSS L+RVE
Sbjct: 418 EVAQMGPVMLPDGGNAVSFEVRTNRNFQGSDFLNAKYSHSSEREPTVDLLQLSSHLKRVE 477

Query: 62  HQKQSMQVKQENDAL-CWP 79
            Q+  M VKQEND   C+P
Sbjct: 478 WQRNYMHVKQENDDFHCFP 496