Jatropha Genome Database

JcCB0158231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0158231.10 + phase: 1 /pseudo/partial
         (213 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029247001 assembled CDS                                       206   5e-54
GSVIVT01035912001 assembled CDS                                       114   4e-26
GSVIVT01033422001 assembled CDS                                        66   1e-11

>GSVIVT01029247001 assembled CDS
          Length = 406

 Score =  206 bits (525), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 108/180 (60%), Positives = 123/180 (68%), Gaps = 6/180 (3%)

Query: 10  NILQRYYVPKFQRHRVKHYLRHSLEKSTVYQKNDSSFLVHAASGQPFEPQPEAYNPKSAS 69
           N   R Y   FQ+H  KH++R   E  T Y++ ++  +V+AASGQP E +P A +PKS  
Sbjct: 44  NGAGRSYTVSFQQHLTKHHVRGIQEGCTFYKRWNTKCVVNAASGQPLESEPGASSPKSTL 103

Query: 70  KSVLNAIDAFYRFSRPHTVIGTXXXXXXXXXXXXEKLSDLSPLFFTGVLEAVAAALMMNI 129
             V NA+DAFYRFSRPHTVIGT            EKLSD SPLFFTGVLEAV AAL+MNI
Sbjct: 104 TPVKNALDAFYRFSRPHTVIGTALSIISVSLLAVEKLSDFSPLFFTGVLEAVVAALLMNI 163

Query: 130 YIVGLNQLSDIEIDKVNKPYLPLASGEYSTGTGVLIVTSFWIM------VSASITFFWQL 183
           YIVGLNQ+SDIEIDKVNKPYLPLASGEYS GTGV IVTSF  M      +  S   FW L
Sbjct: 164 YIVGLNQISDIEIDKVNKPYLPLASGEYSVGTGVGIVTSFAFMSFLVGWIVGSWPLFWAL 223


>GSVIVT01035912001 assembled CDS
          Length = 398

 Score =  114 bits (284), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 62/133 (46%), Positives = 81/133 (60%), Gaps = 7/133 (5%)

Query: 48  VHAASGQPFEPQPEAYNPKSASKSVLNAIDAFYRFSRPHTVIGTXXXXXXXXXXXXEKLS 107
           +H +S   +  +PE  N       V   + AFY FSRPHT+IGT            E +S
Sbjct: 55  IHVSSEYGYPSKPEDQN------HVSKQLRAFYLFSRPHTIIGTVIGITSVSLLPLETIS 108

Query: 108 DLSPLFFTGVLEAVAAALMMNIYIVGLNQLSDIEIDKVNKPYLPLASGEYSTGTGVLIV- 166
           DLSP FF G+L+A+  +++MNIY+VGLNQ+ D+EIDKVNKP LPLASG++S  TG  IV 
Sbjct: 109 DLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETGSQIVF 168

Query: 167 TSFWIMVSASITF 179
            S  + V   I F
Sbjct: 169 ISLLMSVGMGIMF 181


>GSVIVT01033422001 assembled CDS
          Length = 390

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/98 (41%), Positives = 55/98 (56%), Gaps = 9/98 (9%)

Query: 77  DAFYRFSRPHTVIGTXXXXXXXXXXXXEKLSDL---SPLF--FTGVLEAVAAALMMNIYI 131
           DA +RF RPHT+ GT             +  +L   S LF  F+G+L  +      N YI
Sbjct: 96  DACWRFLRPHTIRGTALGSTALVARALIENPNLIKWSLLFKAFSGLLALICG----NGYI 151

Query: 132 VGLNQLSDIEIDKVNKPYLPLASGEYSTGTGVLIVTSF 169
           VG+NQ+ DI IDKVNKPYLP+A+G+ S  +   +V  F
Sbjct: 152 VGINQIYDISIDKVNKPYLPIAAGDLSVQSAWFLVLFF 189