Jatropha Genome Database

JcCB0156721.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0156721.20 - phase: 0 
         (134 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009748001 assembled CDS                                       186   3e-48

>GSVIVT01009748001 assembled CDS
          Length = 135

 Score =  186 bits (472), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 93/124 (75%), Positives = 101/124 (81%), Gaps = 4/124 (3%)

Query: 1   MALSLTSSFLQIKXXXXXXXXXRKVKVNAGMNSNLQVTCRKKDIHPQFYEDAKVYCNGEL 60
           MAL+L+++FLQ K            K NA      Q TCRKKDIHPQFYEDAKVYCNGEL
Sbjct: 1   MALTLSNTFLQRKLSPPTLPIK---KANAVRAYRPQWTCRKKDIHPQFYEDAKVYCNGEL 57

Query: 61  VMTTGGTQKEYVVDVWSGNHPFYLGNRSAVVVDADQVEKFRKKFGELSQLMEIPVLK-GE 119
           VMTTGGTQKEYVVDVWSGNHPFYLGNRS ++VDADQVEKFRKKFGE+SQ+MEIPVLK GE
Sbjct: 58  VMTTGGTQKEYVVDVWSGNHPFYLGNRSGLLVDADQVEKFRKKFGEISQIMEIPVLKYGE 117

Query: 120 IVLP 123
           IVLP
Sbjct: 118 IVLP 121