Jatropha Genome Database

JcCB0156231.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0156231.10 + phase: 0 /partial
         (104 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029697001 assembled CDS                                       169   2e-43

>GSVIVT01029697001 assembled CDS
          Length = 784

 Score =  169 bits (428), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 77/104 (74%), Positives = 90/104 (86%)

Query: 1   MWDTVQQIAIYIHRFHNLDLFQQGFYQIKVTMRWEDSEYASIGTPARVVQYEAHDMDSDS 60
           M +TVQ+IAIYIHRFHNLDLFQQG+YQIK+TMRWED E+   GTPARVVQYEA ++  + 
Sbjct: 33  MLETVQEIAIYIHRFHNLDLFQQGWYQIKITMRWEDEEFELPGTPARVVQYEAPELGPED 92

Query: 61  IYGAWRINDTDNSFLTQPFRIKYARQDVYLSVMISFDLSLSKYK 104
            YG WRI+DTDNSF TQPFRI+YARQDV LS+MISF+LSL KY+
Sbjct: 93  AYGVWRIDDTDNSFSTQPFRIRYARQDVLLSLMISFNLSLRKYE 136