Jatropha Genome Database

JcCB0156001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0156001.10 - phase: 2 /partial
         (252 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022826001 assembled CDS                                       414   e-116
GSVIVT01018104001 assembled CDS                                       218   1e-57
GSVIVT01015987001 assembled CDS                                       213   7e-56
GSVIVT01012222001 assembled CDS                                       208   2e-54
GSVIVT01037798001 assembled CDS                                       196   1e-50
GSVIVT01022381001 assembled CDS                                       185   2e-47
GSVIVT01000746001 assembled CDS                                       145   1e-35
GSVIVT01015984001 assembled CDS                                       135   2e-32
GSVIVT01000745001 assembled CDS                                        84   5e-17
GSVIVT01031426001 assembled CDS                                        62   3e-10

>GSVIVT01022826001 assembled CDS
          Length = 379

 Score =  414 bits (1063), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 210/252 (83%), Positives = 228/252 (90%)

Query: 1   ELPFEFQVLEVALEVVCTYLDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRL 60
           ELPFEFQVLE+ALEVVCTYLD+NVA+LERDAYPVLDELARNVSTKNLEHVRSLKSNLTRL
Sbjct: 128 ELPFEFQVLEIALEVVCTYLDTNVAELERDAYPVLDELARNVSTKNLEHVRSLKSNLTRL 187

Query: 61  LARVQKVRDEIEHLLDDNEDMADLYLTRKWIQNQQSEALLGPAASNGILPAAPHLHRLNS 120
           LARVQKVRDE+EHLLDDNEDMADLYLTRKWIQNQQ+EALLG A SN ++  AP+L RL+S
Sbjct: 188 LARVQKVRDELEHLLDDNEDMADLYLTRKWIQNQQNEALLGAAVSNSLITPAPYLPRLSS 247

Query: 121 CHSASMMTGGSLDQDDVEELEMLFEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQR 180
             S S+ T   +D DDVE+LEML EAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQR
Sbjct: 248 HRSVSLATSNFVDDDDVEDLEMLLEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQR 307

Query: 181 NELIQLQLTLTIASFAIALDTLIAGFFGMNIPCRWYHMDGIFDYFVGVSSAGCFLLFLLI 240
           NELIQLQLTLTIASFAIA++TLIAG FGMNIPC  Y M G+F+ FVG  +AGC LLFLL+
Sbjct: 308 NELIQLQLTLTIASFAIAVETLIAGLFGMNIPCPLYEMHGVFNPFVGCVTAGCILLFLLV 367

Query: 241 LGYARWKKLLGS 252
           LGYARWKKLLGS
Sbjct: 368 LGYARWKKLLGS 379


>GSVIVT01018104001 assembled CDS
          Length = 389

 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 132/253 (52%), Positives = 176/253 (69%), Gaps = 4/253 (1%)

Query: 1   ELPFEFQVLEVALEVVCTYLDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRL 60
           E PFEF+ LEVALE +C++L +   +LE  AYP LD+L   +S+ NL+ VR LKS +TRL
Sbjct: 140 ESPFEFRALEVALEAICSFLAARTTELETAAYPALDQLTSKISSLNLDRVRKLKSAMTRL 199

Query: 61  LARVQKVRDEIEHLLDDNEDMADLYLTRKWIQNQQSEALLGPAASNGILPAAPHLHRLNS 120
            ARVQKVRDE+E LLDD++DMADLYL+RK      S  + G  A N    +     +++ 
Sbjct: 200 TARVQKVRDELEQLLDDDDDMADLYLSRKLAG--ASSPVSGSGAPNWFAASPTIGSKISR 257

Query: 121 CHSASMMTGGSLDQDDVEELEMLFEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQR 180
              AS+ T    D++DVEELEML EAYFMQ+DGT NK+ ++REYIDDTEDY+NIQLDN R
Sbjct: 258 VSRASVATVRG-DENDVEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHR 316

Query: 181 NELIQLQLTLTIASFAIALDTLIAGFFGMNIPCRWYHMDG-IFDYFVGVSSAGCFLLFLL 239
           N+LIQL+L L+  +  +++ +L+AG FGMNIP  W    G +F + V V+   C LLF++
Sbjct: 317 NQLIQLELFLSSGTVCLSIYSLVAGIFGMNIPYTWNDDHGFMFKWVVIVTGVSCALLFVV 376

Query: 240 ILGYARWKKLLGS 252
           I+ YAR K L+GS
Sbjct: 377 IMSYARHKGLVGS 389


>GSVIVT01015987001 assembled CDS
          Length = 354

 Score =  213 bits (542), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 116/267 (43%), Positives = 166/267 (62%), Gaps = 18/267 (6%)

Query: 2   LPFEFQVLEVALEVVCTYLDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRLL 61
           LPFEF+ LEVALE  CT+LD+  A+LE +AYP+LDEL   +ST NLE  R LKS L  L 
Sbjct: 86  LPFEFRALEVALEAACTFLDAQAAELEIEAYPLLDELTSKISTLNLERARRLKSRLVALT 145

Query: 62  ARVQKVRDEIEHLLDDNEDMADLYLTRKWIQNQQS----EALLGPAASNGILPAA----- 112
            RVQKVRDEIE L+DD+ DMA++YLT K  + + S    ++L+G  + +G L  +     
Sbjct: 146 RRVQKVRDEIEQLMDDDGDMAEMYLTEKKRRMESSFYGEQSLMGYRSIDGALSVSAPVSP 205

Query: 113 ----PHLHRLNSCHSASM-----MTGGSLDQDDVEELEMLFEAYFMQLDGTRNKILSVRE 163
               P   RL    S +      M       + +EELEML EAYF+ +D T NK+ S++E
Sbjct: 206 VSSPPETRRLEKSLSVTRSRHESMKSSESATESIEELEMLLEAYFVVIDSTLNKLTSLKE 265

Query: 164 YIDDTEDYVNIQLDNQRNELIQLQLTLTIASFAIALDTLIAGFFGMNIPCRWYHMDGIFD 223
           YIDDTED++NIQLDN RN+LIQ +L LT A+F +A+  ++AG FGMN     +   G F 
Sbjct: 266 YIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIPMFDDPGAFK 325

Query: 224 YFVGVSSAGCFLLFLLILGYARWKKLL 250
           + + ++     ++F   + + ++++L+
Sbjct: 326 WVLIITGICGIIIFCSFVWFFKYRRLM 352


>GSVIVT01012222001 assembled CDS
          Length = 349

 Score =  208 bits (529), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 119/276 (43%), Positives = 164/276 (59%), Gaps = 27/276 (9%)

Query: 1   ELPFEFQVLEVALEVVCTYLDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRL 60
           +LPFEF+ LE+ALE+ C  LD+ V +LE + YPVLDELA ++ST NLE VR  K +L  L
Sbjct: 77  DLPFEFRALELALELTCMSLDAQVKELEMEIYPVLDELASSISTLNLERVRRFKGHLLAL 136

Query: 61  LARVQKVRDEIEHLLDDNEDMADLYLTRKWIQNQQSEA--------LLGPAASNGILPAA 112
             RVQKVRDEIEHL+DD+ DMA++YLT K    Q+ EA        L   +    +LPA+
Sbjct: 137 TQRVQKVRDEIEHLMDDDGDMAEMYLTEK---KQRMEAYPWNDLHSLSNVSGGTRVLPAS 193

Query: 113 PHL---------HRLNSCHSASM-------MTGGSLDQDDVEELEMLFEAYFMQLDGTRN 156
             +          RL    S  M        TG S + +++E+LEML EAYF+ +D T N
Sbjct: 194 APVSPVESISGSQRLQRAFSTIMNSSKHGSFTGSSNNGENIEQLEMLLEAYFVFIDNTLN 253

Query: 157 KILSVREYIDDTEDYVNIQLDNQRNELIQLQLTLTIASFAIALDTLIAGFFGMNIPCRWY 216
           K+LS++EYIDDTED +NI+L N +N+LIQ +L LT A+F   +   + G FGMN     +
Sbjct: 254 KLLSLKEYIDDTEDLINIKLGNVQNQLIQFELLLTAATFVATIFAAVTGVFGMNFTATIF 313

Query: 217 HMDGIFDYFVGVSSAGCFLLFLLILGYARWKKLLGS 252
                F++ + ++   C  L+   L Y R KK+  S
Sbjct: 314 DYPSAFNWVLVITGVICGFLYFSFLLYFRHKKVFPS 349


>GSVIVT01037798001 assembled CDS
          Length = 435

 Score =  196 bits (498), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 113/296 (38%), Positives = 163/296 (55%), Gaps = 47/296 (15%)

Query: 2   LPFEFQVLEVALEVVCTYLDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRLL 61
           LPFEF  LE  LE  C+ L++    LE++A+P LD+L   +ST NLE VR +KS L  + 
Sbjct: 139 LPFEFIALEACLEAACSCLENEARTLEQEAHPALDKLTSKISTLNLERVRQIKSRLVAIT 198

Query: 62  ARVQKVRDEIEHLLDDNEDMADLYLTRKWIQNQQSEALLGP-----AASNGILPA----- 111
            RVQKVRDE+EHLLDD+EDMA++YLT K IQ     + +          +G+L A     
Sbjct: 199 GRVQKVRDELEHLLDDDEDMAEMYLTDKMIQQHLENSSVSSIHERDGMDDGVLHADMDDG 258

Query: 112 ------------------------APHLHRLNSCHSASMMTGGSLDQD---------DVE 138
                                    P  H   + H+    + G+             DVE
Sbjct: 259 IPDEISLEANGVSATYEGDLQNIDNPQEHLFGTPHALGRDSHGTHTSTTHSAISKHLDVE 318

Query: 139 ELEMLFEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLTLTIASFAIA 198
           ELEML EAYF+Q+DGT NK+ ++REY+DDTEDY+NI LD+++N L+Q+ + LT A+  ++
Sbjct: 319 ELEMLLEAYFVQIDGTLNKLSTLREYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVS 378

Query: 199 LDTLIAGFFGMNIPCRWY--HMDGI--FDYFVGVSSAGCFLLFLLILGYARWKKLL 250
              ++AG FGMNI    +     G+  F + VG  + G   L+++ + + R K+LL
Sbjct: 379 AFVVVAGIFGMNIHIELFDDKKSGVQEFLWTVGGGATGSIFLYVIAIAWCRHKRLL 434


>GSVIVT01022381001 assembled CDS
          Length = 443

 Score =  185 bits (469), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/256 (41%), Positives = 153/256 (59%), Gaps = 10/256 (3%)

Query: 2   LPFEFQVLEVALEVVCTYLDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRLL 61
           LPFEF+ LE  LE  C  L+S    LE++AYP LDEL  N+ST NLE VR +KS L  + 
Sbjct: 193 LPFEFRALEACLESACRCLESETQTLEQEAYPALDELTSNISTLNLERVRQIKSRLVAIS 252

Query: 62  ARVQKVRDEIEHLLDDNEDMADLYLTRKWIQNQQSEALLGPAASNGILPAAPHLHRLNSC 121
            RVQKVRDE+EHLLDD+ DMA+++LT K ++    ++ +     N  L         +  
Sbjct: 253 GRVQKVRDELEHLLDDDNDMAEMFLTEKLVRPSLDQSSIKEELCNDELEEDDERTEESKS 312

Query: 122 HSASMMTGGSLDQDDVEELEMLFEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRN 181
            S S +  G   + +VEELEML EAYF+Q+DG   K+  + EY+ DTED++NI LD+++N
Sbjct: 313 ESNSEIFSGF--KPNVEELEMLLEAYFVQVDGILQKLSDMSEYVGDTEDFINIMLDDKQN 370

Query: 182 ELIQLQLTLTIASFAIALDTLIAGFFGMNIPCRWYHMDG-----IFDYFVGVSSAGCFLL 236
           +L+Q+ + L+ A+  I    ++ G FGMNI    +  DG       +  +G +   C  L
Sbjct: 371 QLLQMGVMLSTANMIINAGIVVVGLFGMNITISLF--DGGPSTKFLETTLG-TLGSCVAL 427

Query: 237 FLLILGYARWKKLLGS 252
           +L+   + + KKLLGS
Sbjct: 428 YLIAFVWGKKKKLLGS 443


>GSVIVT01000746001 assembled CDS
          Length = 169

 Score =  145 bits (367), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/174 (47%), Positives = 118/174 (67%), Gaps = 7/174 (4%)

Query: 81  MADLYLTRKWIQNQQSEALLGPAASNGILPAAPHL-HRLNSCHSASMMTGGSLDQDDVEE 139
           MADLYL+RK     ++ +    + +   L A+P +  R++    AS +T  + +++DVEE
Sbjct: 1   MADLYLSRKL---TRASSSSSGSGAPLWLLASPTIGSRISRTSRASAVT--THEENDVEE 55

Query: 140 LEMLFEAYFMQLDGTRNKILSVREYIDDTEDYVNIQLDNQRNELIQLQLTLTIASFAIAL 199
           LEML EAYFMQ+DGT NK+ ++REYIDDTEDY+NIQLDN RN+LIQL+L L+  +  +++
Sbjct: 56  LEMLLEAYFMQIDGTLNKLSTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSI 115

Query: 200 DTLIAGFFGMNIPCRWYHMDG-IFDYFVGVSSAGCFLLFLLILGYARWKKLLGS 252
            +L+A  FGMNIP  W +  G +F + V +S   C  +FL I+ YAR K L+GS
Sbjct: 116 YSLVAAIFGMNIPYTWRNDHGYMFKWVVILSGMACASIFLSIISYARSKGLVGS 169


>GSVIVT01015984001 assembled CDS
          Length = 258

 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/176 (44%), Positives = 106/176 (60%), Gaps = 19/176 (10%)

Query: 20  LDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRLLARVQKVRDEIEHLLDDNE 79
           L +  A+LE +AYP+LDEL   +ST NLE  R LKS L  L  RVQKVRDEIE L+DD+ 
Sbjct: 50  LINQAAELEIEAYPLLDELTSKISTLNLERARRLKSRLVALTRRVQKVRDEIEQLMDDDG 109

Query: 80  DMADLYLTRKWIQNQQS----EALLGPAASNGILPAA---------PHLHRLNSCHSASM 126
           DMA++YLT K  + + S    ++L+G  + +G L  +         P   RL    S + 
Sbjct: 110 DMAEMYLTEKKRRMESSFYGEQSLMGYRSIDGALSVSAPVSPVSSPPETRRLEKSLSVTR 169

Query: 127 ------MTGGSLDQDDVEELEMLFEAYFMQLDGTRNKILSVREYIDDTEDYVNIQL 176
                 M       + +EELEML EAYF+ +D T NK+ S++EYIDDTED++NIQL
Sbjct: 170 RSRHESMKSSESATESIEELEMLLEAYFVVIDSTLNKLTSLKEYIDDTEDFINIQL 225


>GSVIVT01000745001 assembled CDS
          Length = 214

 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 50/67 (74%)

Query: 1   ELPFEFQVLEVALEVVCTYLDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRL 60
           E PFEF+ LEVALE +C++LD+   +LE  AYP LDEL   +S++NL+ VR LKS +TRL
Sbjct: 141 EFPFEFRALEVALEAICSFLDARTRELETAAYPALDELTSKISSRNLDRVRKLKSAMTRL 200

Query: 61  LARVQKV 67
             RVQK+
Sbjct: 201 TNRVQKM 207


>GSVIVT01031426001 assembled CDS
          Length = 488

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 108/267 (40%), Gaps = 58/267 (21%)

Query: 2   LPFEFQVLEVALEVVCTYLDSNVADLERDAYPVLDELARNVSTKNLEHVRSLKSNLTRLL 61
           +PFE +V+E AL      L+  + DLE     +L+ L   ++   LE +R  K  L  L 
Sbjct: 262 MPFELEVVEAALLSRIQRLEQKLMDLEPRVQALLEVLPNRLTADILEQLRLSKQTLVELG 321

Query: 62  ARVQKVRDEIEHLLDDNEDMADLYLTRKWIQNQQSEALLGPAASNGILP----------- 110
           +R   ++  +  LL+D  +     + R  I  +    + G       +P           
Sbjct: 322 SRAGALKQMLLDLLEDPHE-----IRRMCIMGKNCTLVKGNENMECSVPLEKQIAEEEEE 376

Query: 111 -----AAPHLHRLNSCHSASMMTGGSLDQDDVEELEMLFEAYFMQLDGTRNKILSVREYI 165
                   +L R  SCH               E L          LD  R          
Sbjct: 377 EIEMLLENYLQRCESCHG------------QAERL----------LDSAR---------- 404

Query: 166 DDTEDYVNIQLDNQRNELIQLQLTLTIASFAIALDTLIAGFFGMNIPCRWYHMDGIFDYF 225
            + ED + + L ++R E+ +++L L + +F IA+  L+AG FGMN+  + Y  +  F ++
Sbjct: 405 -EMEDSIAVNLSSRRLEVSRVELLLQVGTFCIAVGALVAGIFGMNL--KSYLEEHAFAFW 461

Query: 226 VGVSS--AGCFLLFLLILGYARWKKLL 250
           +  +    G  + F L+  Y R +K+L
Sbjct: 462 LTTAGIIVGAVVAFFLMYSYLRARKIL 488