Jatropha Genome Database

JcCB0155891.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0155891.10 + phase: 2 /pseudo/partial
         (98 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01012696001 assembled CDS                                       154   6e-39
GSVIVT01037680001 assembled CDS                                       128   6e-31
GSVIVT01034677001 assembled CDS                                        49   6e-07
GSVIVT01035121001 assembled CDS                                        47   2e-06

>GSVIVT01012696001 assembled CDS
          Length = 562

 Score =  154 bits (390), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 74/79 (93%), Positives = 76/79 (96%)

Query: 20  GVYGSLLSTPIINPPQSAILGMHSIVSRPMVVDGNVVPRPMMYIALTYDHRLIDGREAVF 79
           GVYGSLLSTPIINPPQSAILGMHSIV+RPMVV GNVV RPMMYIALTYDHRLIDGREAVF
Sbjct: 484 GVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVSRPMMYIALTYDHRLIDGREAVF 543

Query: 80  FLRRIKDVVEDTRRLLLDV 98
           FLRRIKDVVED RRLLLD+
Sbjct: 544 FLRRIKDVVEDPRRLLLDI 562


>GSVIVT01037680001 assembled CDS
          Length = 392

 Score =  128 bits (321), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 62/79 (78%), Positives = 68/79 (86%)

Query: 20  GVYGSLLSTPIINPPQSAILGMHSIVSRPMVVDGNVVPRPMMYIALTYDHRLIDGREAVF 79
           GVYGSLLSTPIINPPQSAILGM+SIV RPMVV GN++   MMYIALTYDH LIDGREAV 
Sbjct: 314 GVYGSLLSTPIINPPQSAILGMYSIVKRPMVVGGNIIATSMMYIALTYDHWLIDGREAVL 373

Query: 80  FLRRIKDVVEDTRRLLLDV 98
           FLR IK+V+ED   LLLD+
Sbjct: 374 FLRHIKEVMEDPCCLLLDI 392


>GSVIVT01034677001 assembled CDS
          Length = 659

 Score = 48.5 bits (114), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 7/73 (9%)

Query: 30  IINPPQSAIL--GMHSIVSRPMVVDGNVVPRPM----MYIALTYDHRLIDGREAVFFLRR 83
           IINPPQS IL  G  + V  P VV G+ + +P     M + L+ DHR+ DG+    FL  
Sbjct: 588 IINPPQSGILAVGRGNKVVEP-VVGGDGLEKPAVVTKMNLTLSADHRVFDGKVGGAFLSA 646

Query: 84  IKDVVEDTRRLLL 96
           ++    D RRLLL
Sbjct: 647 LRSNFSDIRRLLL 659


>GSVIVT01035121001 assembled CDS
          Length = 463

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 19  VGVYGSLLSTPIINPPQSAILGMHSIVSRPMVVDG-NVVPRPMMYIALTYDHRLIDGREA 77
           +G  G    +P++N P+ +I+ +  +   P  VD  NV P  +M + +  DHR++DG   
Sbjct: 382 IGAIGGKFGSPLLNSPEVSIIAIGRLQKVPQFVDDENVYPASIMTVNIGADHRVLDGATV 441

Query: 78  VFFLRRIKDVVEDTRRLLL 96
             F    K  +E   +L+L
Sbjct: 442 ARFCNEWKLYIEKPEQLML 460