Jatropha Genome Database

JcCB0155101.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0155101.20 + phase: 0 /partial
         (93 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007537001 assembled CDS                                       163   1e-41

>GSVIVT01007537001 assembled CDS
          Length = 479

 Score =  163 bits (413), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 75/89 (84%), Positives = 82/89 (92%)

Query: 3  PPVDFKDIQDKLSFHFRPWQRSFQFWVRAVDVYTGYKVFQLRVSLVKDVQKQEAMWERQH 62
          PP+DFKD Q+KLS HFRP+ RSFQFWVRAVD+YTGYKVFQLRVS VKDV+KQE MWE QH
Sbjct: 2  PPLDFKDFQEKLSTHFRPFHRSFQFWVRAVDIYTGYKVFQLRVSFVKDVKKQEEMWEVQH 61

Query: 63 ELAADKIYAMCSDLGGFFLKIAQIIGKPD 91
          ELAA+KIYA C+DLGGFFLKIAQIIGKPD
Sbjct: 62 ELAAEKIYATCADLGGFFLKIAQIIGKPD 90