Jatropha Genome Database

JcCB0154921.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0154921.10 + phase: 0 
         (362 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032911001 assembled CDS                                       278   2e-75
GSVIVT01008109001 assembled CDS                                       142   2e-34
GSVIVT01021528001 assembled CDS                                       103   1e-22
GSVIVT01021167001 assembled CDS                                        93   3e-19
GSVIVT01014236001 assembled CDS                                        88   8e-18
GSVIVT01020666001 assembled CDS                                        84   1e-16
GSVIVT01008234001 assembled CDS                                        67   1e-11
GSVIVT01011962001 assembled CDS                                        65   4e-11
GSVIVT01036449001 assembled CDS                                        65   7e-11

>GSVIVT01032911001 assembled CDS
          Length = 465

 Score =  278 bits (712), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 168/371 (45%), Positives = 224/371 (60%), Gaps = 41/371 (11%)

Query: 3   SSSKEVDSPSEKEGDHASSYHDHGXXXXXXXXXXXXXPWLRLKDPRIVRVSRAFGGKDRH 62
           ++S+E D  ++ EGD + +                  PWLRLKDPRIVRVSRA+GGKDRH
Sbjct: 91  TNSREADFSAKLEGDESDA--------RIAKNSSTSTPWLRLKDPRIVRVSRAYGGKDRH 142

Query: 63  SKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHXXXXXXXXXXX 122
           SKVCT+RGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKH           
Sbjct: 143 SKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHEIDELPPLQMP 202

Query: 123 XVNFALNHQAMLSSSEIGASQSN----KLNSSISWEENQGVVLSSTRPNFWTTDAHLKNK 178
             NF  +HQ M++S E+GASQ N    K+++ I WE+  G+     R +FW ++A L+ K
Sbjct: 203 PGNFVQSHQPMITSLEVGASQFNKEELKISNGIDWEDPSGL----PRSSFWGSNAFLRAK 258

Query: 179 SKHVA---TSEKENWTTRRNEEDNKQKSNEVAASSSFFPRTTHSSSPAGLINNAIPYTSF 235
           SK V     +EK NW  +RNEE  +        SS+ FP  T+ SS  GL+++++PY  +
Sbjct: 259 SKEVPRENVNEKVNW-MKRNEEGGQ-------VSSNIFPPRTNQSSLPGLLSSSMPYGPY 310

Query: 236 FQLEHPSFPLSHMGSHGFVSQTDYHHDLHXXXXXXXXXXXXXXXXXQIF--------PYF 287
           + LE  +  LS +GSHG  SQT+   DLH                 Q+          YF
Sbjct: 311 YHLEPSNLSLSTLGSHGLTSQTE---DLHNFSVVPLPSSLSLTSGSQVLVCPPGATQSYF 367

Query: 288 PSHATTEIDH-PKQINHFQMLTPSAQTLFPNSLTPTPFSLNQSARPFHFSVTNPRLFHSH 346
           P H  T ++  P+QINHFQ+L+ S+Q + PN+LTP  +S+ Q  RP H S+ + ++ HS 
Sbjct: 368 PPHVPTSMEFDPRQINHFQLLSSSSQNILPNALTPPLYSIGQPVRPLHLSMAH-KIHHSQ 426

Query: 347 N-SGSQPDKDQ 356
           + +G  P+KD+
Sbjct: 427 SINGGHPNKDK 437


>GSVIVT01008109001 assembled CDS
          Length = 217

 Score =  142 bits (358), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 71/129 (55%), Positives = 83/129 (64%)

Query: 11  PSEKEGDHASSYHDHGXXXXXXXXXXXXXPWLRLKDPRIVRVSRAFGGKDRHSKVCTIRG 70
           P+ +E D  +   D                W   ++PRIVRVSR+FGGKDRHSKVCT+RG
Sbjct: 64  PNSRERDFQAKLEDATIEGKFSKAPSSSRQWSAFRNPRIVRVSRSFGGKDRHSKVCTVRG 123

Query: 71  LRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAKHXXXXXXXXXXXXVNFALNH 130
           LRDRR+RLSVPTAIQLYDLQDRLGL+QPSKVVDWLL+A KH             N    H
Sbjct: 124 LRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLDATKHEIDKLPPLQIPQGNLGQFH 183

Query: 131 QAMLSSSEI 139
           Q+ML S E+
Sbjct: 184 QSMLVSHEL 192


>GSVIVT01021528001 assembled CDS
          Length = 319

 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 53/62 (85%)

Query: 48  RIVRVSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLN 107
           RI RVSRA GGKDRHSKV T +GLRDRRVRLSV TAIQ YDLQDRLG +QPSK V+WL+ 
Sbjct: 41  RIFRVSRASGGKDRHSKVLTSKGLRDRRVRLSVTTAIQFYDLQDRLGYDQPSKAVEWLIK 100

Query: 108 AA 109
           AA
Sbjct: 101 AA 102


>GSVIVT01021167001 assembled CDS
          Length = 382

 Score = 92.8 bits (229), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 48/59 (81%)

Query: 52  VSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAK 110
           ++R+ G KDRHSKVCT +G RDRRVRLS  TAIQ YD+QDRLG ++PSK VDWL+  AK
Sbjct: 61  IARSIGKKDRHSKVCTSKGPRDRRVRLSANTAIQFYDVQDRLGYDRPSKAVDWLMEKAK 119


>GSVIVT01014236001 assembled CDS
          Length = 300

 Score = 87.8 bits (216), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 40/59 (67%), Positives = 47/59 (79%)

Query: 52  VSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAK 110
           + R+ G KDRHSKVCT +G RDRRVRLS  TAIQ YD+QDRLG ++PSK VDWL+  AK
Sbjct: 38  IVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAK 96


>GSVIVT01020666001 assembled CDS
          Length = 307

 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/59 (66%), Positives = 46/59 (77%)

Query: 52  VSRAFGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAK 110
           + R+ G KDRHSKV T +G RDRRVRLS  TAIQ YD+QDRLG ++PSK VDWL+  AK
Sbjct: 17  IVRSTGRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAK 75


>GSVIVT01008234001 assembled CDS
          Length = 366

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 39/52 (75%)

Query: 59  KDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAK 110
           +DRHSK+ T RG RDRR+RLS+  A + +DLQD LG ++ SK V+WLL  AK
Sbjct: 139 RDRHSKINTARGPRDRRMRLSLEIARKFFDLQDMLGFDKASKTVEWLLIKAK 190


>GSVIVT01011962001 assembled CDS
          Length = 404

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 28/54 (51%), Positives = 39/54 (72%)

Query: 57  GGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAK 110
           G KDRHSK+ T +G RDRR+RLS+  A + +DLQD LG ++ SK ++WL   +K
Sbjct: 64  GKKDRHSKIYTAQGPRDRRMRLSLQIARKFFDLQDILGFDKASKTIEWLFTKSK 117


>GSVIVT01036449001 assembled CDS
          Length = 273

 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/52 (51%), Positives = 39/52 (75%)

Query: 59  KDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNAAK 110
           KDRHSK+ T +G R+RRVRLS+  A + +DLQD LG ++ S+ ++WLL  +K
Sbjct: 72  KDRHSKITTAKGPRERRVRLSIKIARKFFDLQDMLGFDKASRTLEWLLMKSK 123