Jatropha Genome Database

JcCB0154691.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0154691.10 - phase: 0 /partial
         (157 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01011478001 assembled CDS                                       241   9e-65
GSVIVT01010091001 assembled CDS                                       236   2e-63
GSVIVT01035962001 assembled CDS                                       198   1e-51

>GSVIVT01011478001 assembled CDS
          Length = 320

 Score =  241 bits (615), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 113/158 (71%), Positives = 133/158 (84%), Gaps = 1/158 (0%)

Query: 1   VLHPIADSININKKVWDLYFRDVLPRLVKDGNDGNCGSTAVCDTICLQVLSKRIHYGKFV 60
           VLHP +D ININ+++W +YFRD+LPRLVK+G+DGN GS AVCDTICLQ LSKRIHYGKFV
Sbjct: 163 VLHPGSDLININEQIWSMYFRDLLPRLVKEGDDGNYGSAAVCDTICLQALSKRIHYGKFV 222

Query: 61  AEAKFRNSPDAYKAAIRAQDRDRLMDLLTYSKVEEAIKKRVEMKAITFGQEVTI-CFGDE 119
           AEAKF+ SPDAY+AAI+AQD  RLMD+LTY +VE+ +K RVEMK   +GQEV +    D+
Sbjct: 223 AEAKFQASPDAYEAAIKAQDSQRLMDMLTYQRVEDVVKMRVEMKTKAYGQEVVVNGMEDD 282

Query: 120 DTDPVYKIDPGLVAELYGEWIMPLTKEVQVEYLLRRLD 157
           D  PVYKI P LVA+LYG+WIMPLTKEVQV YLLRRLD
Sbjct: 283 DAGPVYKIKPSLVADLYGDWIMPLTKEVQVAYLLRRLD 320


>GSVIVT01010091001 assembled CDS
          Length = 273

 Score =  236 bits (603), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/158 (73%), Positives = 129/158 (81%), Gaps = 1/158 (0%)

Query: 1   VLHPIADSININKKVWDLYFRDVLPRLVKDGNDGNCGSTAVCDTICLQVLSKRIHYGKFV 60
           VLHP ADS+N+N KVW++YF+++LPRLVK G+DGN GS AVCDT CLQ LSKRIHYGKFV
Sbjct: 116 VLHPCADSVNLNNKVWNIYFKNLLPRLVKAGDDGNHGSAAVCDTNCLQALSKRIHYGKFV 175

Query: 61  AEAKFRNSPDAYKAAIRAQDRDRLMDLLTYSKVEEAIKKRVEMKAITFGQEV-TICFGDE 119
           AEAKF  S D Y+AAIR QDRD+LM LLTY  VE AIKKRVE KA  FGQEV  +  GD+
Sbjct: 176 AEAKFLESSDVYEAAIREQDRDKLMALLTYEAVEAAIKKRVEAKAKAFGQEVRNMGEGDD 235

Query: 120 DTDPVYKIDPGLVAELYGEWIMPLTKEVQVEYLLRRLD 157
             DP YKI P LVA LYG+WIMPLTKEVQVEYLLRRLD
Sbjct: 236 GDDPAYKIKPRLVANLYGDWIMPLTKEVQVEYLLRRLD 273


>GSVIVT01035962001 assembled CDS
          Length = 248

 Score =  198 bits (503), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 91/157 (57%), Positives = 112/157 (71%), Gaps = 1/157 (0%)

Query: 1   VLHPIADSININKKVWDLYFRDVLPRLVKDGNDGNCGSTAVCDTICLQVLSKRIHYGKFV 60
           VLHP   SIN+NK +WD+Y   +LP    +G+DGN G TA CD  CLQ +S+RIHYGKFV
Sbjct: 93  VLHPAGSSINVNKTIWDIYLNKLLPLFAAEGDDGNYGLTAACDLACLQAISRRIHYGKFV 152

Query: 61  AEAKFRNSPDAYKAAIRAQDRDRLMDLLTYSKVEEAIKKRVEMKAITFGQEVTICFGDED 120
           AE KF+ SP+ Y  AI  QDR  LM +LT+  VEE +KKRVE KA  FGQEV +   +  
Sbjct: 153 AEVKFKESPEEYGPAIHDQDRAGLMKMLTFEAVEEMVKKRVEKKATVFGQEVNLS-DNSK 211

Query: 121 TDPVYKIDPGLVAELYGEWIMPLTKEVQVEYLLRRLD 157
           +   YK+DP +V+ LY EW+MPLTK+VQVEYLLRRLD
Sbjct: 212 SKETYKVDPSVVSRLYEEWVMPLTKQVQVEYLLRRLD 248