Jatropha Genome Database

JcCB0154661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0154661.10 - phase: 0 /partial
         (188 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01036649001 assembled CDS                                       336   4e-93
GSVIVT01033632001 assembled CDS                                       313   2e-86
GSVIVT01011929001 assembled CDS                                       288   9e-79
GSVIVT01033531001 assembled CDS                                       224   2e-59
GSVIVT01036134001 assembled CDS                                       220   3e-58
GSVIVT01008960001 assembled CDS                                       195   1e-50
GSVIVT01022200001 assembled CDS                                       193   4e-50
GSVIVT01022365001 assembled CDS                                        65   1e-11

>GSVIVT01036649001 assembled CDS
          Length = 469

 Score =  336 bits (861), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 162/188 (86%), Positives = 168/188 (89%)

Query: 1   GDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRSAVNSHAGDAELRIIIDGIMAHYDEI 60
           GDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRSAVNSHA DAELR+I+D IMAHYD+I
Sbjct: 238 GDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRSAVNSHASDAELRVIVDNIMAHYDDI 297

Query: 61  FRLKSNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGIGN 120
           FRLK  AAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQL+GIGN
Sbjct: 298 FRLKGVAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLLGIGN 357

Query: 121 LQQSSQQAEDALSQGMEALQQSLAETXXXXXXXXXXXXXNVANYMGQMAMAMGKLGTLEG 180
           LQQSSQQAEDALSQGMEALQQSLAET             NVANYMGQMAMAMGKLGTLEG
Sbjct: 358 LQQSSQQAEDALSQGMEALQQSLAETLSSGSLGSSGSSGNVANYMGQMAMAMGKLGTLEG 417

Query: 181 FIRTGNYI 188
           FIR  + +
Sbjct: 418 FIRQADNL 425


>GSVIVT01033632001 assembled CDS
          Length = 451

 Score =  313 bits (803), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 148/188 (78%), Positives = 162/188 (86%)

Query: 1   GDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRSAVNSHAGDAELRIIIDGIMAHYDEI 60
           GDQ+HSMSGNGA+AFDVEYARWLEE NRQINELRSAVNSHA D ELR I+D + AH+D+I
Sbjct: 220 GDQSHSMSGNGALAFDVEYARWLEEHNRQINELRSAVNSHASDTELRTIVDNVTAHFDDI 279

Query: 61  FRLKSNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGIGN 120
           FRLK  AAKADVFH+LSGMWKTPAERCF+W+GGFRSSE+LKLLVNQLEPLTEQQL+ I N
Sbjct: 280 FRLKGIAAKADVFHILSGMWKTPAERCFMWIGGFRSSEVLKLLVNQLEPLTEQQLMSIYN 339

Query: 121 LQQSSQQAEDALSQGMEALQQSLAETXXXXXXXXXXXXXNVANYMGQMAMAMGKLGTLEG 180
           LQQSSQQAEDALSQGMEALQQSLAET             NVANYMGQMAMAMGKLGTLEG
Sbjct: 340 LQQSSQQAEDALSQGMEALQQSLAETLTSGSPGPSGSSGNVANYMGQMAMAMGKLGTLEG 399

Query: 181 FIRTGNYI 188
           F+R  + +
Sbjct: 400 FLRQADNL 407


>GSVIVT01011929001 assembled CDS
          Length = 453

 Score =  288 bits (737), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 138/188 (73%), Positives = 158/188 (84%), Gaps = 1/188 (0%)

Query: 1   GDQAHSMSGNGAMAFDVEYARWLEEQNRQINELRSAVNSHAGDAELRIIIDGIMAHYDEI 60
           GDQ+HSM GNGA+AFD++YARWL+E  R IN+LRSAVNSH GD ELRI++DG+MAHYDEI
Sbjct: 223 GDQSHSMGGNGALAFDMDYARWLDEHQRLINDLRSAVNSHVGDNELRILVDGVMAHYDEI 282

Query: 61  FRLKSNAAKADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGIGN 120
           FRLKS  AK+DVFH+LSGMWKTPAERCF+WLGGFRSSELLK+L NQLEPLT+QQL+GI N
Sbjct: 283 FRLKSMGAKSDVFHMLSGMWKTPAERCFMWLGGFRSSELLKILGNQLEPLTDQQLMGICN 342

Query: 121 LQQSSQQAEDALSQGMEALQQSLAETXXXXXXXXXXXXXNVANYMGQMAMAMGKLGTLEG 180
           LQQSSQQAEDALSQGMEALQQSL ET             NVA+YMGQMA+AMGKL TLE 
Sbjct: 343 LQQSSQQAEDALSQGMEALQQSLVET-LSSNSLGPAGSGNVADYMGQMAIAMGKLATLEN 401

Query: 181 FIRTGNYI 188
           F+   + +
Sbjct: 402 FLHQADLL 409


>GSVIVT01033531001 assembled CDS
          Length = 431

 Score =  224 bits (571), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 102/180 (56%), Positives = 137/180 (76%), Gaps = 3/180 (1%)

Query: 9   GNGAMAFDVEYARWLEEQNRQINELRSAVNSHAGDAELRIIIDGIMAHYDEIFRLKSNAA 68
            + A  FD+EY RWLEE +R + ELR+AV  H  + +LR+ +D  +AH+D +  LKS  A
Sbjct: 210 SSDAAVFDMEYGRWLEEHHRLMCELRAAVQEHLPENDLRLFVDNCIAHFDGMMNLKSMVA 269

Query: 69  KADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGIGNLQQSSQQA 128
           K+DVFHL+SGMWKTPAERCF+W+GGFR SE++K+++NQ+EPLTEQQ++GI  LQQS+Q+A
Sbjct: 270 KSDVFHLVSGMWKTPAERCFMWMGGFRPSEVIKIILNQIEPLTEQQILGICGLQQSTQEA 329

Query: 129 EDALSQGMEALQQSLAETXXXXXXXXXXXXXNVANYMGQMAMAMGKLGTLEGFIRTGNYI 188
           E+ALSQG+EAL QSL++T             N+ANYMGQMA+AM KL TLEGF+R  + +
Sbjct: 330 EEALSQGLEALNQSLSDT---IASDSLSAPPNMANYMGQMAIAMNKLSTLEGFVRQADNL 386


>GSVIVT01036134001 assembled CDS
          Length = 500

 Score =  220 bits (561), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 102/176 (57%), Positives = 134/176 (76%), Gaps = 9/176 (5%)

Query: 11  GAMAFDVEYARWLEEQNRQINELRSAVNSHAGDAELRIIIDGIMAHYDEIFRLKSNAAKA 70
           GA  FD+EYARWLE+ +R ++ELR+ + +H  D +LR+I+DG ++HYDEIFRLK  AAK+
Sbjct: 260 GAAIFDMEYARWLEDDHRHMSELRTGLQAHLLDGDLRVIVDGYLSHYDEIFRLKGVAAKS 319

Query: 71  DVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGIGNLQQSSQQAED 130
           DVFHL++GMW TPAERCFLW+GGFR S+L+K+L+ QL+PLTEQQ++GI  LQ SSQQAE+
Sbjct: 320 DVFHLITGMWTTPAERCFLWMGGFRPSDLIKMLIAQLDPLTEQQVMGIYGLQHSSQQAEE 379

Query: 131 ALSQGMEALQQSLAETXXXXXXXXXXXXXNVANYMGQMAMAMGKLGTLEGFIRTGN 186
           ALSQG E LQQSL +T             +VA+ M  M MA+G+L  LEGF+R  +
Sbjct: 380 ALSQGQEQLQQSLIDT---------IASGSVADDMAHMVMALGQLTNLEGFVRQAD 426


>GSVIVT01008960001 assembled CDS
          Length = 361

 Score =  195 bits (495), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 128/179 (71%), Gaps = 7/179 (3%)

Query: 10  NGAMAFDVEYARWLEEQNRQINELRSAVNSHAGDAELRIIIDGIMAHYDEIFRLKSNAAK 69
           +G   F++EY  W+EEQ+RQ  ELR+A+ +H  D ELRI+++  + HY E+FR+K++AAK
Sbjct: 144 SGIATFEMEYGHWVEEQHRQNCELRNALQAHVTDIELRILVESALNHYYELFRMKADAAK 203

Query: 70  ADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGIGNLQQSSQQAE 129
           ADVF+L+SGMW+T AER FLW+GGFR SELL +L+   EPLT+QQL+ + NL+QSSQQAE
Sbjct: 204 ADVFYLMSGMWRTSAERFFLWIGGFRPSELLNVLMPHFEPLTDQQLLDVCNLRQSSQQAE 263

Query: 130 DALSQGMEALQQSLAETXXXXXXXXXXXXXNVANYMGQMAMAMGKLGTLEGFIRTGNYI 188
           DALSQGM+ LQQ+LA++                NY  QMA A+ KL  LE F+   +++
Sbjct: 264 DALSQGMDKLQQTLAQS-------IVTDPVGAGNYRSQMAEAVEKLDALESFVNQADHL 315


>GSVIVT01022200001 assembled CDS
          Length = 349

 Score =  193 bits (491), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 93/179 (51%), Positives = 129/179 (72%), Gaps = 7/179 (3%)

Query: 10  NGAMAFDVEYARWLEEQNRQINELRSAVNSHAGDAELRIIIDGIMAHYDEIFRLKSNAAK 69
           +G  AF++EY  W+EEQ+ QI ELR+A+++H  D ELRI+++  M HY  +FR+K+NAAK
Sbjct: 132 SGIAAFEMEYGHWVEEQSSQICELRTALHAHISDVELRILVETAMNHYFNLFRMKANAAK 191

Query: 70  ADVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQLEPLTEQQLVGIGNLQQSSQQAE 129
           ADVF+++SGMWKT AER FLW+GGFR SELLK+LV QL+PLT+QQ++ + NL+QS QQAE
Sbjct: 192 ADVFYMMSGMWKTSAERFFLWIGGFRPSELLKVLVPQLDPLTDQQILDVCNLRQSCQQAE 251

Query: 130 DALSQGMEALQQSLAETXXXXXXXXXXXXXNVANYMGQMAMAMGKLGTLEGFIRTGNYI 188
           DAL+QGME LQQ LAE                 +Y+ Q+A A+ KL  +  F+   +++
Sbjct: 252 DALTQGMEKLQQILAEAVAAGQLGE-------GSYIPQLATALEKLEAVVSFVNQADHL 303


>GSVIVT01022365001 assembled CDS
          Length = 255

 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 79/156 (50%), Gaps = 24/156 (15%)

Query: 15  FDVEYARWLEEQNRQINELRSAV--NSHAGDAE--LRIIIDGIMAHYDEIFRLKSNAAKA 70
           F   +  WL EQN+ + EL SA   N H  D++  L  +++ +++HY   +  KS + + 
Sbjct: 11  FHKFFESWLTEQNQHLQELISASRNNQHTDDSDQILCPLVERVVSHYHNYYHAKSLSTRD 70

Query: 71  DVFHLLSGMWKTPAERCFLWLGGFRSSELLKLLVNQ--------------------LEPL 110
           ++  +L+  W++  E  FLW+GG+R S    LL ++                    L  +
Sbjct: 71  NILSMLTPPWRSLLEDAFLWVGGWRPSVAFHLLYSKSGLQFESGLADLIRGLSTGDLGDM 130

Query: 111 TEQQLVGIGNLQQSSQQAEDALSQGMEALQQSLAET 146
           + +QL  +  LQ+ + + E  +++ M  +Q+++A++
Sbjct: 131 SHEQLCRVDELQRKTIREEREMTENMARIQETVADS 166