Jatropha Genome Database

JcCB0152261.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0152261.10 - phase: 0 /partial
         (174 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01032990001 assembled CDS                                       140   3e-34

>GSVIVT01032990001 assembled CDS
          Length = 685

 Score =  140 bits (353), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 74/125 (59%), Positives = 90/125 (72%), Gaps = 6/125 (4%)

Query: 50  PKFSMDDFEALGXXXXXXXXXXXXXXXXVVGERLLFSNVTRLGFAAGHGSPALRTEETSA 109
           P FS+DDFEALG                  GER LFSNVT+LGFAAGH SP L+ EE  +
Sbjct: 567 PTFSIDDFEALGSPVVTSTSPP------TFGERKLFSNVTKLGFAAGHDSPGLKIEEVHS 620

Query: 110 LHNNKVTNDSSSVSGTKNSGTPSFANVISRVKSGEALDAPKTNEIGKKGKKSSRVLLSTA 169
           +H+  + +DSS V+G++N+GTPSFANVISR KS E+LDA KT   GKKGKKS+++LLSTA
Sbjct: 621 VHSTSMASDSSGVTGSRNAGTPSFANVISRGKSVESLDASKTIGTGKKGKKSNQILLSTA 680

Query: 170 GGRRY 174
           GGRRY
Sbjct: 681 GGRRY 685