Jatropha Genome Database

JcCB0151651.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0151651.10 + phase: 1 /pseudo/partial
         (168 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01007471001 assembled CDS                                        77   3e-15
GSVIVT01020997001 assembled CDS                                        48   2e-06

>GSVIVT01007471001 assembled CDS
          Length = 163

 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/107 (42%), Positives = 54/107 (50%), Gaps = 5/107 (4%)

Query: 28  AHEIMTQRNHTQRTCGNAVVVDVDSGRTTRLTYXXXXXXXXXXXXHAVINCEHYVNLESS 87
           A      RN+++R  G   VVDVD    T                  +IN + Y+NLESS
Sbjct: 22  ATAFAAARNNSRRIRGR-TVVDVDLEVQTTRPLNNRNKRRRAPPNQTIINDDRYINLESS 80

Query: 88  GSSMRDNAQQLQX----XXXXKEPTFNCPICMGPFVEETSTKCGHIF 130
            S +R+N    Q         KEPTFNCPICMG  V+E STKCGHIF
Sbjct: 81  NSLLRENKPPEQTWHVPPLPPKEPTFNCPICMGQLVDEMSTKCGHIF 127


>GSVIVT01020997001 assembled CDS
          Length = 220

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 19/24 (79%), Positives = 19/24 (79%)

Query: 107 PTFNCPICMGPFVEETSTKCGHIF 130
           PTF CPICM    EETSTKCGHIF
Sbjct: 161 PTFTCPICMDQLTEETSTKCGHIF 184