Jatropha Genome Database

JcCB0151131.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0151131.10 + phase: 0 /partial
         (127 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01033319001 assembled CDS                                       163   2e-41

>GSVIVT01033319001 assembled CDS
          Length = 1112

 Score =  163 bits (412), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 75/126 (59%), Positives = 93/126 (73%)

Query: 2   LMPEWSKSVQDWNSMIGPLIDKMFAEPSNATIVRFLSYISEHLAEAADVVLHRVLLQMQS 61
           L+PEWS+SVQDWN +IGPLIDKMFAEPSNAT+VRFLSYISEHLAEAAD+V HR+LL M+ 
Sbjct: 646 LIPEWSESVQDWNLLIGPLIDKMFAEPSNATLVRFLSYISEHLAEAADIVFHRILLHMKG 705

Query: 62  QKGIKKGLLSRWESKSCQNEDLMGMQQSLFEXXXXXXXXXXXXXXVFNDLNSFIMYGQLP 121
           QK + +   ++WESK+   +D M +Q SLF+              VFNDLNS ++YGQLP
Sbjct: 706 QKELDESFFTKWESKTYAADDSMKLQHSLFDRLCPLLVIRLLPMRVFNDLNSSVIYGQLP 765

Query: 122 VQGITH 127
            Q + H
Sbjct: 766 DQVVVH 771