Jatropha Genome Database

JcCB0150901.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0150901.10 + phase: 0 /pseudo/partial
         (257 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01022128001 assembled CDS                                       303   4e-83
GSVIVT01001372001 assembled CDS                                        68   3e-12

>GSVIVT01022128001 assembled CDS
          Length = 658

 Score =  303 bits (777), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 143/176 (81%), Positives = 158/176 (89%), Gaps = 2/176 (1%)

Query: 65  EQSIESGTPIDIVSSLKSYERARRLRVAIIHGMARMAAIMASTYKAYLGVGLGPLSFLTK 124
           EQSI+SGTPID+VS LKSYE+ARR+RVA+IHGMARMAAIMASTYKAYLGVGLGPLSFLTK
Sbjct: 401 EQSIKSGTPIDVVSCLKSYEKARRIRVAVIHGMARMAAIMASTYKAYLGVGLGPLSFLTK 460

Query: 125 YRIPHPGRVGGRFFIDIAMPVMLSWVLGGNSSKLEGRSQCCRLSDKASDQLRTWFEDDDA 184
            RIPHPGRVGGRFFIDIAMP+MLSWVLGGNSSKLEGR   CRLSDKASDQLR WFEDDDA
Sbjct: 461 LRIPHPGRVGGRFFIDIAMPLMLSWVLGGNSSKLEGRPPSCRLSDKASDQLRRWFEDDDA 520

Query: 185 LERALNAEWFLLPLGNKVVVSEPICLSRNENTPCVVGKVSHKDFPGMSIVIPSPQV 240
           LERA+  EWFLLP G   +  +PICLS++EN PC++G VSH DFPG+S VIPSP+V
Sbjct: 521 LERAIGGEWFLLPSGESGL--QPICLSKDENKPCIIGSVSHTDFPGISTVIPSPKV 574


>GSVIVT01001372001 assembled CDS
          Length = 475

 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 55/95 (57%), Gaps = 4/95 (4%)

Query: 64  MEQSIESGTPI----DIVSSLKSYERARRLRVAIIHGMARMAAIMASTYKAYLGVGLGPL 119
           +++   SG+ I     IVS+L+ YE+ R  RV  +H  +RMA+ + + Y+ Y+  G GPL
Sbjct: 377 LDKIANSGSSILLSDQIVSALRRYEKKRMFRVGTVHTASRMASEVLAAYQPYMEFGFGPL 436

Query: 120 SFLTKYRIPHPGRVGGRFFIDIAMPVMLSWVLGGN 154
             L+  RI HPG    R F+ + +   ++W++ G+
Sbjct: 437 PGLSTLRITHPGIQVARMFLQVFLQQFMTWMISGH 471