Jatropha Genome Database

JcCB0150481.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0150481.20 - phase: 0 
         (229 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01016929001 assembled CDS                                       437   e-123
GSVIVT01015266001 assembled CDS                                       434   e-122
GSVIVT01016931001 assembled CDS                                       172   8e-44

>GSVIVT01016929001 assembled CDS
          Length = 304

 Score =  437 bits (1124), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 204/229 (89%), Positives = 220/229 (96%)

Query: 1   MREEYGKLNRVEMSIWECCQLLNNVVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHL 60
           MREEY +LNRV+MSIWECC+LLN+VVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDW+HL
Sbjct: 76  MREEYSRLNRVQMSIWECCELLNDVVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWMHL 135

Query: 61  TGLIHDLGKVLLHPSFGELAQWAVVGDTYPVGCAFDESIVHHKYFKENPDFNNPAYNTKY 120
           T LIHDLGKVLL PSFGEL QWAVVGDT+PVGCAFDESIVHHK+FKE+PD+ NPAYNTKY
Sbjct: 136 TALIHDLGKVLLLPSFGELPQWAVVGDTFPVGCAFDESIVHHKHFKESPDYYNPAYNTKY 195

Query: 121 GVYSEGCGLNNVMMSWGHDDYMYLVAKQNKTSLPSAALFIIRYHSFYALHRSGAYKHLMN 180
           GVYSEGCGL NVMMSWGHDDYMYLVAK+NKT+LPSA LF+IRYHSFYALHRS AYK+LMN
Sbjct: 196 GVYSEGCGLENVMMSWGHDDYMYLVAKENKTTLPSAGLFVIRYHSFYALHRSDAYKYLMN 255

Query: 181 EEDIENLKWLQIFNKYDLYSKSKVRVDVEKVKPYYLSLIDKYFPAKLKW 229
           EEDIENLKWL+IFNKYDLYSKSKVR+DVEKVKPYYLSLI+KYFPAKL W
Sbjct: 256 EEDIENLKWLKIFNKYDLYSKSKVRIDVEKVKPYYLSLIEKYFPAKLNW 304


>GSVIVT01015266001 assembled CDS
          Length = 309

 Score =  434 bits (1116), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 200/229 (87%), Positives = 220/229 (96%)

Query: 1   MREEYGKLNRVEMSIWECCQLLNNVVDESDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHL 60
           MRE YGKL+RVEMSIWECC+LLN+V+D+SDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHL
Sbjct: 81  MREAYGKLDRVEMSIWECCELLNDVIDDSDPDLDEPQIEHLLQTAEAIRKDYPNEDWLHL 140

Query: 61  TGLIHDLGKVLLHPSFGELAQWAVVGDTYPVGCAFDESIVHHKYFKENPDFNNPAYNTKY 120
           TGLIHDLGKVLLHPSFGEL QWAVVGDT+P+GCAFDE+ VHHKYFKENPD+NNP Y+TK 
Sbjct: 141 TGLIHDLGKVLLHPSFGELPQWAVVGDTFPLGCAFDEANVHHKYFKENPDYNNPHYSTKN 200

Query: 121 GVYSEGCGLNNVMMSWGHDDYMYLVAKQNKTSLPSAALFIIRYHSFYALHRSGAYKHLMN 180
           G+YSEGCGL+NVM+SWGHDDYMYLVAK+NK++LP AALFIIRYHSFY LHR GAYKHLMN
Sbjct: 201 GIYSEGCGLDNVMISWGHDDYMYLVAKENKSTLPPAALFIIRYHSFYPLHRHGAYKHLMN 260

Query: 181 EEDIENLKWLQIFNKYDLYSKSKVRVDVEKVKPYYLSLIDKYFPAKLKW 229
           EED+ENLKWL IFNKYDLYSKSKVR+DVEKVKPYYLSLI+KYFPAKL+W
Sbjct: 261 EEDVENLKWLHIFNKYDLYSKSKVRIDVEKVKPYYLSLIEKYFPAKLRW 309


>GSVIVT01016931001 assembled CDS
          Length = 162

 Score =  172 bits (437), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 81/103 (78%), Positives = 90/103 (87%), Gaps = 1/103 (0%)

Query: 64  IHDLGKVLLHPSFGELAQWAVVGDTYPVGCAFDESIVHHKYFKENPDFNNPAYNTKYGVY 123
           +H+L KVL  PSFG L QWAVVGDT+P GCAFDESIVHHKY KENPD +NPAYNTKYGVY
Sbjct: 11  LHNLVKVLF-PSFGGLLQWAVVGDTFPGGCAFDESIVHHKYLKENPDDHNPAYNTKYGVY 69

Query: 124 SEGCGLNNVMMSWGHDDYMYLVAKQNKTSLPSAALFIIRYHSF 166
           SEGCGL NVMMSWGHDDYMYLVAK+ KT+LP+A L +I+YHS 
Sbjct: 70  SEGCGLENVMMSWGHDDYMYLVAKEKKTTLPAAGLSVIKYHSL 112