Jatropha Genome Database
- JcCB0150201.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCB0150201.10 + phase: 0 /partial
(119 letters)
Database: grape_pep_20100319
26,346 sequences; 9,959,944 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
GSVIVT01037591001 assembled CDS 251 5e-68
GSVIVT01034615001 assembled CDS 220 1e-58
GSVIVT01011026001 assembled CDS 189 3e-49
GSVIVT01016462001 assembled CDS 76 3e-15
GSVIVT01031180001 assembled CDS 75 6e-15
GSVIVT01029844001 assembled CDS 73 3e-14
GSVIVT01024867001 assembled CDS 73 4e-14
GSVIVT01023546001 assembled CDS 71 1e-13
GSVIVT01027800001 assembled CDS 70 3e-13
GSVIVT01019425001 assembled CDS 69 3e-13
GSVIVT01032569001 assembled CDS 51 1e-07
GSVIVT01008096001 assembled CDS 51 1e-07
GSVIVT01020128001 assembled CDS 51 1e-07
GSVIVT01000823001 assembled CDS 50 3e-07
GSVIVT01025420001 assembled CDS 49 6e-07
GSVIVT01001347001 assembled CDS 49 6e-07
GSVIVT01037734001 assembled CDS 48 9e-07
>GSVIVT01037591001 assembled CDS
Length = 1049
Score = 251 bits (641), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 117/119 (98%), Positives = 118/119 (99%)
Query: 1 PDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRD 60
PDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRD
Sbjct: 931 PDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRD 990
Query: 61 LVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPQVANDRGSLAWI 119
LVVVPKLIHPLPPAISSPETSPERH+EDTWMQELNANRPPTPTRGRPQV NDRGSLAWI
Sbjct: 991 LVVVPKLIHPLPPAISSPETSPERHLEDTWMQELNANRPPTPTRGRPQVTNDRGSLAWI 1049
>GSVIVT01034615001 assembled CDS
Length = 928
Score = 220 bits (560), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 105/119 (88%), Positives = 108/119 (90%), Gaps = 1/119 (0%)
Query: 1 PDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRD 60
PDRVMEFCN ND+QLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRD
Sbjct: 811 PDRVMEFCNANDVQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRD 870
Query: 61 LVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPQVANDRGSLAWI 119
LVVVPKLIHPLPPAISSPE SP +H E WMQELNA+RPPTP RGRPQ ND GS AWI
Sbjct: 871 LVVVPKLIHPLPPAISSPEASP-KHTEHAWMQELNASRPPTPVRGRPQGTNDHGSHAWI 928
>GSVIVT01011026001 assembled CDS
Length = 888
Score = 189 bits (479), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 97/119 (81%), Positives = 104/119 (87%)
Query: 1 PDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRD 60
PDRV +FC N LQLI+RAHECVMDGFERFAQG LITLFSATNYCGTANNAGAILV+GR
Sbjct: 770 PDRVTDFCKKNKLQLIIRAHECVMDGFERFAQGQLITLFSATNYCGTANNAGAILVVGRG 829
Query: 61 LVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPQVANDRGSLAWI 119
LVVVPKLIHPLPP + SPETSPER ++DTWMQELN RPPTPTRGRPQ DR SLA+I
Sbjct: 830 LVVVPKLIHPLPPPLQSPETSPERTVDDTWMQELNIQRPPTPTRGRPQPDLDRNSLAYI 888
>GSVIVT01016462001 assembled CDS
Length = 308
Score = 76.3 bits (186), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 49/70 (70%)
Query: 1 PDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRD 60
PD+V EF +DL L+ RAH+ V DG+E FA L+T+FSA NYCG +NAGA++++ D
Sbjct: 226 PDKVSEFLTKHDLDLVCRAHQVVEDGYEFFADRQLVTVFSAPNYCGEFDNAGAMMIVDED 285
Query: 61 LVVVPKLIHP 70
L+ +++ P
Sbjct: 286 LMCSFQILKP 295
>GSVIVT01031180001 assembled CDS
Length = 322
Score = 75.5 bits (184), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 11/104 (10%)
Query: 2 DRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDL 61
D+V EF + NDL LI R H+ V DG+E FA+ L+T+FSA NY G +NAGA+L + +DL
Sbjct: 228 DKVAEFLDKNDLDLICRGHQVVEDGYEFFAKRRLVTIFSAPNYGGEFDNAGALLSVDKDL 287
Query: 62 VVVPKLIHPLPPAIS-SPETSPERHIEDTWMQELNANRPPTPTR 104
V +++ P+ S S T P +LN +P P +
Sbjct: 288 VCSFEIMKPVDNKASLSGSTVP----------KLNLKKPIKPGK 321
>GSVIVT01029844001 assembled CDS
Length = 274
Score = 73.2 bits (178), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 47/70 (67%)
Query: 2 DRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDL 61
D+V EF +DL LI RAH+ V DG+E FA+ L+T+FSA NYCG NNAGA++ + L
Sbjct: 201 DKVAEFLKKHDLDLICRAHQVVEDGYEFFAERQLVTIFSAPNYCGEFNNAGALMSVDASL 260
Query: 62 VVVPKLIHPL 71
+ +++ P
Sbjct: 261 LCSFQILKPF 270
>GSVIVT01024867001 assembled CDS
Length = 301
Score = 72.8 bits (177), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 48/70 (68%)
Query: 1 PDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRD 60
PD+V EF + +D+ LI RAH+ V DG+E FA L+T+FSA NYCG +NAGA++ +
Sbjct: 229 PDKVSEFLSKHDMDLICRAHQVVEDGYEFFADRQLVTIFSAPNYCGEFDNAGAMMSVDES 288
Query: 61 LVVVPKLIHP 70
L+ +++ P
Sbjct: 289 LMCSFQILKP 298
>GSVIVT01023546001 assembled CDS
Length = 316
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Query: 1 PDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRD 60
PD+V EF +DL L+ RAH+ V DG+E FA L+T+FSA NYCG +NAGA++ +
Sbjct: 200 PDKVTEFLEKHDLDLVCRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDDT 259
Query: 61 LVVVPKLIHPLPPAI---------SSPETSPE 83
L+ +++ P + + P SPE
Sbjct: 260 LMCSFQILKPAVKKLKFSFGSTTTTKPGNSPE 291
>GSVIVT01027800001 assembled CDS
Length = 326
Score = 69.7 bits (169), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%)
Query: 1 PDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRD 60
PD+V E +DL LI RAH+ V DG+E FA L+T+FSA NYCG +NAGA++ +
Sbjct: 225 PDKVTELLQKHDLDLICRAHQVVEDGYEFFANRQLVTIFSAPNYCGEFDNAGAMMSVDDT 284
Query: 61 LVVVPKLIHP 70
L+ +++ P
Sbjct: 285 LMCSFQVLKP 294
>GSVIVT01019425001 assembled CDS
Length = 319
Score = 69.3 bits (168), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 42/56 (75%)
Query: 2 DRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVL 57
D+V EF +DL LI RAH+ V DG+E FA+ L+T+FSA NYCG +NAGA++++
Sbjct: 227 DKVTEFLQKHDLDLICRAHQVVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGAMMIV 282
>GSVIVT01032569001 assembled CDS
Length = 306
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 2 DRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDL 61
D +F + N L L+ RAH+ VM+G+ + +++T+FSA NYC N AIL +G ++
Sbjct: 220 DIAAQFNHTNGLSLVARAHQLVMEGYNWCQEKNVVTVFSAPNYCYRCGNLAAILEIGENM 279
>GSVIVT01008096001 assembled CDS
Length = 268
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 2 DRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDL 61
D +F + N L LI RAH+ VM+G+ + +++T+FSA NYC N AIL +G ++
Sbjct: 182 DIASQFNHTNGLTLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGENM 241
Query: 62 VVVPKLIHPLPPAISSPETS 81
P P I P+T+
Sbjct: 242 DQNFLQFDPAPRQI-EPDTT 260
>GSVIVT01020128001 assembled CDS
Length = 306
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 2 DRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDL 61
D +F + N L LI RAH+ VM+G+ + +++T+FSA NYC N AIL +G ++
Sbjct: 220 DIAAQFNHTNGLTLISRAHQLVMEGYNWCQEKNVVTVFSAPNYCYRCGNMAAILEIGENM 279
Query: 62 VVVPKLIHPLPPAISSPETS 81
P P I P+T+
Sbjct: 280 DQNFLQFDPAPRQI-EPDTT 298
>GSVIVT01000823001 assembled CDS
Length = 466
Score = 49.7 bits (117), Expect = 3e-07, Method: Composition-based stats.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 2 DRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAIL 55
D F N+L L+VR+HE +G+E G LIT+FSA NYC N GA +
Sbjct: 377 DVTKRFLQENNLDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFI 430
>GSVIVT01025420001 assembled CDS
Length = 314
Score = 48.5 bits (114), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 6 EFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAIL 55
+F + N+L+LI RAH+ VM+GF + ++T+FSA NYC N +IL
Sbjct: 232 QFNHTNNLKLIARAHQLVMEGFNWGHEQKVVTIFSAPNYCYRCGNMASIL 281
>GSVIVT01001347001 assembled CDS
Length = 311
Score = 48.5 bits (114), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 6 EFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAIL 55
+F + N+L+LI RAH+ VM+GF + ++T+FSA NYC N +IL
Sbjct: 229 QFNHTNNLKLIARAHQLVMEGFNWGHEQKVVTIFSAPNYCYRCGNMASIL 278
>GSVIVT01037734001 assembled CDS
Length = 305
Score = 48.1 bits (113), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 4 VMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDL 61
V F + N++ I RAH+ VM+G++ + ++T++SA NYC N AIL L +L
Sbjct: 220 VASFNHENNIDYICRAHQLVMEGYKWMFKNQIVTVWSAPNYCYRCGNVAAILELDENL 277