Jatropha Genome Database

JcCB0149951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0149951.10 + phase: 1 /partial
         (195 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01008197001 assembled CDS                                       358   e-100
GSVIVT01018517001 assembled CDS                                       283   4e-77
GSVIVT01033770001 assembled CDS                                       276   4e-75
GSVIVT01024818001 assembled CDS                                       226   6e-60

>GSVIVT01008197001 assembled CDS
          Length = 498

 Score =  358 bits (920), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 183/240 (76%), Positives = 190/240 (79%), Gaps = 46/240 (19%)

Query: 2   QIKIGMDVAASEFLTKDGKYDLNFKKQPNDGAHVLSAQNLGELYKEFIKDFPIVSIEDPF 61
           +IKIGMDVAASEF TKDGKYDLNFKKQPNDGAHV SAQ+L ELYKEF+KDFPIVSIEDPF
Sbjct: 259 KIKIGMDVAASEFFTKDGKYDLNFKKQPNDGAHVRSAQSLCELYKEFVKDFPIVSIEDPF 318

Query: 62  DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKACNGLLLK------------- 108
           DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAI+KKACN LLLK             
Sbjct: 319 DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIEKKACNALLLKAIPNHLKIFISFI 378

Query: 109 ---------------------------------VNQIGSVTESIRAALDSKAAGWGVMVS 135
                                            VNQIG+VTESI+AALDSKAAGWGVMVS
Sbjct: 379 CLIKIKAKRFWSCISPRKSVCGFISKQEMSCTAVNQIGTVTESIQAALDSKAAGWGVMVS 438

Query: 136 HRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEELGNVRYAGEAFRSP 195
           HRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEELG+VRYAGEAFRSP
Sbjct: 439 HRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEELGHVRYAGEAFRSP 498


>GSVIVT01018517001 assembled CDS
          Length = 445

 Score =  283 bits (724), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 139/198 (70%), Positives = 161/198 (81%), Gaps = 4/198 (2%)

Query: 2   QIKIGMDVAASEFL-TKDGKYDLNFKKQPNDGAHVLSAQNLGELYKEFIKDFPIVSIEDP 60
           ++ IGMDVAASEF   KD  YDLNFK++ NDG+  +S  +L  +YK F+ D+PIVSIEDP
Sbjct: 244 KVVIGMDVAASEFYDNKDKTYDLNFKEENNDGSQKISGDSLKNVYKSFVNDYPIVSIEDP 303

Query: 61  FDQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKACNGLLLKVNQIGSVTES 118
           FDQDDW  +A + S +   +Q+VGDDLLVTNPKR+ +AI++KACN LLLKVNQIGSVTES
Sbjct: 304 FDQDDWEHYAKMTSEIGEKVQIVGDDLLVTNPKRVEKAIKEKACNALLLKVNQIGSVTES 363

Query: 119 IRAALDSKAAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRI 178
           I A   SK AGWGVM SHRSGETED FIADLSVGLA+GQIKTGAPCRSERLAKYNQLLRI
Sbjct: 364 IEAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRI 423

Query: 179 EEELGNVR-YAGEAFRSP 195
           EEELG+   YAG  FR+P
Sbjct: 424 EEELGSAAVYAGAKFRAP 441


>GSVIVT01033770001 assembled CDS
          Length = 444

 Score =  276 bits (707), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 135/197 (68%), Positives = 155/197 (78%), Gaps = 3/197 (1%)

Query: 2   QIKIGMDVAASEFLTKDGKYDLNFKKQPNDGAHVLSAQNLGELYKEFIKDFPIVSIEDPF 61
           ++ IGMDVAASEF   D  YDLNFK++ NDG+  +S   L  LYK F+ ++PI SIEDPF
Sbjct: 244 EVVIGMDVAASEFYGTDKTYDLNFKEENNDGSEKISGDALKNLYKSFVNEYPISSIEDPF 303

Query: 62  DQDDWSSWASLQSSV--DIQLVGDDLLVTNPKRIAEAIQKKACNGLLLKVNQIGSVTESI 119
           DQDDW  +  L   +   +Q+VGDDLLVTNPKR+ +AI++KACN LLLKVNQIG+VTESI
Sbjct: 304 DQDDWEHYTKLTCEIGEKVQIVGDDLLVTNPKRVEKAIKEKACNALLLKVNQIGTVTESI 363

Query: 120 RAALDSKAAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIE 179
            A   SK AGWGVM SHRSGETED FIADLSVGLA+GQIKTGAPCRSERLAKYNQLLRIE
Sbjct: 364 EAVKMSKRAGWGVMASHRSGETEDTFIADLSVGLATGQIKTGAPCRSERLAKYNQLLRIE 423

Query: 180 EELG-NVRYAGEAFRSP 195
           EELG +  YAG  FR P
Sbjct: 424 EELGADAVYAGANFRKP 440


>GSVIVT01024818001 assembled CDS
          Length = 485

 Score =  226 bits (575), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 112/193 (58%), Positives = 142/193 (73%), Gaps = 2/193 (1%)

Query: 2   QIKIGMDVAASEFLTKDGKYDLNFKKQPNDGAHVLSAQNLGELYKEFIKDFPIVSIEDPF 61
           +IKI +DVAA++F     KYDL+FK     G +  S +++ E+YKE   D+PIVSIEDPF
Sbjct: 292 KIKIAIDVAATDFCI-GAKYDLDFKSPNKSGQNFKSGEDMIEMYKELCNDYPIVSIEDPF 350

Query: 62  DQDDWSSWASLQSSVDIQLVGDDLLVTNPKRIAEAIQKKACNGLLLKVNQIGSVTESIRA 121
           D++DW    +       Q+VGDDLL++NPKRI  A ++  CN LLLKVNQ+G+VTE+I  
Sbjct: 351 DKEDWEHIRNFCGLGICQVVGDDLLMSNPKRIERARRESTCNALLLKVNQVGTVTEAIEV 410

Query: 122 ALDSKAAGWGVMVSHRSGETEDNFIADLSVGLASGQIKTGAPCRSERLAKYNQLLRIEEE 181
              +K A WGV+ SHR GETED+F+ADLSVGLA+GQIK GAPCR ERLAKYNQL+RIEEE
Sbjct: 411 VKLAKDAHWGVVTSHRCGETEDSFLADLSVGLATGQIKAGAPCRGERLAKYNQLIRIEEE 470

Query: 182 LGN-VRYAGEAFR 193
           LG+   YAGE +R
Sbjct: 471 LGDQAVYAGEDWR 483