Jatropha Genome Database

JcCB0149161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0149161.10 + phase: 0 /pseudo/partial
         (226 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01009184001 assembled CDS                                       168   2e-42

>GSVIVT01009184001 assembled CDS
          Length = 641

 Score =  168 bits (426), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/154 (64%), Positives = 114/154 (74%), Gaps = 11/154 (7%)

Query: 76  DLEYELDVFPDVSTEASTEAAACVKVLIASGLPSDSTHPNSTTVEAPLTINIPNGKPCRF 135
           DLEY+L+ FP +STEAS EA ACVKVLIAS LPSDS+ PNS+ VEAPLTINIP G+  R 
Sbjct: 93  DLEYDLEAFPSISTEASAEATACVKVLIASSLPSDSSLPNSSMVEAPLTINIPCGQSSRA 152

Query: 136 TSENLQ-PAIMKGVNITVPVSVQKQPLPAVTSAEGLDANGSGSGV--PRRKRKPWSDSED 192
            SE  +    M+G NIT+PVSVQK        +EG DANGS SG    R+KRKPWS  ED
Sbjct: 153 PSEYSRLSGSMQGTNITIPVSVQK--------SEGFDANGSTSGSLPARKKRKPWSSDED 204

Query: 193 LELIAAVQKYGEGNWANILRSEVKWDRTASQLSQ 226
            ELIAAVQK GEGNWANIL+ + K DR+ASQLSQ
Sbjct: 205 KELIAAVQKCGEGNWANILKGDFKGDRSASQLSQ 238