Jatropha Genome Database

JcCB0148821.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCB0148821.10 - phase: 0 /partial
         (182 letters)

Database: grape_pep_20100319 
           26,346 sequences; 9,959,944 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GSVIVT01029063001 assembled CDS                                       211   2e-55
GSVIVT01016511001 assembled CDS                                        50   5e-07
GSVIVT01034782001 assembled CDS                                        47   5e-06

>GSVIVT01029063001 assembled CDS
          Length = 8784

 Score =  211 bits (536), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 112/168 (66%), Positives = 125/168 (74%), Gaps = 17/168 (10%)

Query: 10   RQPQPRSFHNPSNRRVAQARVP-ATRTSQLRSRLFNRSPAALSRARNPSLATLSTARNFQ 68
            RQ Q RS  NPS RR  QAR P +TR +QLRSR  N+S A             S  RN  
Sbjct: 8609 RQSQSRSSQNPSIRRGTQARGPTSTRMAQLRSRFPNQSHA-----------IPSGERNLH 8657

Query: 69   FPLGMDIDMRLDILEALE----EFSDMSMTTSRILQVQRDFNENDYEMLLALDENNHQRG 124
            FPL MD+DMR+DILEALE    +F DM M    ILQ+QRDFNENDYEMLLALDENNH  G
Sbjct: 8658 FPLNMDLDMRIDILEALEAAVGDFGDMRMP-GHILQIQRDFNENDYEMLLALDENNHNVG 8716

Query: 125  ASVNRINSLPESTVQTDNFEETCAICLETPTVGETIRHLPCLHKFHKD 172
            ASVN++NSLP+STVQTDNFEE+CAICLETPT+G+TIRHLPCLHKFHKD
Sbjct: 8717 ASVNQMNSLPQSTVQTDNFEESCAICLETPTIGDTIRHLPCLHKFHKD 8764


>GSVIVT01016511001 assembled CDS
          Length = 275

 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 48/109 (44%), Gaps = 38/109 (34%)

Query: 101 VQRDFNENDYEMLLALDENNHQRGASVNR--INSLP------------------------ 134
           + R+F++ DYE L ALD  N     S++   IN+LP                        
Sbjct: 131 LDREFDDLDYETLRALDSENVPTTPSMSEEEINALPVHKYKVAGTQGGGSSMQQGSSSAS 190

Query: 135 -----------ESTVQTDNFEETCAICLETPTVGETIRHLPCLHKFHKD 172
                       ST   D+ E TC++CLE   VGE IR LPCLH+FH +
Sbjct: 191 AEKKQDINNAVASTKAPDD-ELTCSVCLEQVNVGELIRSLPCLHQFHAN 238


>GSVIVT01034782001 assembled CDS
          Length = 424

 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 127 VNRINSLPESTVQTDNFEE-TCAICLETPTVGETIRHLPCLHKFH 170
           V  + SL  +TV  DN    TCAICLE   VGE +R LPC HKFH
Sbjct: 198 VKAMPSLIFTTVLEDNCTSRTCAICLEDYNVGEKLRILPCRHKFH 242